Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0796 ATGGCGAAGCTATCACAGCAAAACCATAAGAATAGTGCAAACAGCAATGCTACTAATACTACTCTCTCTGTGACAAAGGTGAAGCGGACTCGCAAAACTGTCCCCAGAGACTCTCCTCCTCAGCGGAGCTCGATATATCGGGGCGTCACGAGGCATCGGTGGACTGGCCGATACGAGGCTCATTTGTGGGATAAGAACTGCTGGAATGAATCACAGAACAAGAAAGGAAGACAAGGTGCCTACCATGATGAAGAAGCCGCAGCACATGCTTATGACTTGGCAGCTCTCAAATACTGGGGTCCAGAAACCATTCTCAATTTTCCGCTATCAACATATGAAAAGGAGTTGAAGGAAATGGAGGGTCTGTCAAGAGAAGAATACATTGGATCCTTGAGAAGAAGAAGCAGCGGTTTTTCTCGAGGTGTTTCAAAATATAGAGGGGTTGCAAGACATCATCACAATGGCAGATGGGAAGCGCGGATTGGCAGAGTGTTCGGCAACAAATACCTCTATCTTGGCACATATGCTACTCAGGAGGAGGCAGCGACTGCATATGATATGGCTGCCATAGAGTATCGCGGTCTTAACGCGGTTACCAACTTTGATCTCAGTCGCTACATCAAATGGTTAAAGCCTAATCAAAATAACCCATGCGAACAGCCCAATAACCCTAACCTTGACTCTAATTTGACTCCAAACCCTAATCATGATTTTGGAATCAGCTTCCTGAATCACCCACAGACTTCTGGTACTGCTGCCTGCAGTGAACCTCCATTGACTCAGACCAGGCCTCCCATTGCCTCATCGGCGCTTGGCCTTCTACTTCAGTCCTCAAAGTTCAAAGAGATGATGGAGATGACAACTGCCGCCGACCACCTATCGACACCGCCTGAGTCTGAGCTGCCACGGTGCAGCTTCCCTGACGACATTCAGACGTACTTCGAGTGCCAGGATTCCGGCAGTTACGAGGAAGGAGACGATGTTATCTTCAGTGAGCTCAACTCGTTCATACCTCCCATGTTCCAATGTGATTTCAGTGCTTAA 1044 0.4799 MAKLSQQNHKNSANSNATNTTLSVTKVKRTRKTVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQGAYHDEEAAAHAYDLAALKYWGPETILNFPLSTYEKELKEMEGLSREEYIGSLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLKPNQNNPCEQPNNPNLDSNLTPNPNHDFGISFLNHPQTSGTAACSEPPLTQTRPPIASSALGLLLQSSKFKEMMEMTTAADHLSTPPESELPRCSFPDDIQTYFECQDSGSYEEGDDVIFSELNSFIPPMFQCDFSA* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0796 347 SUPERFAMILY DNA-binding domain 44 110 IPR016177 GO:0003677
Vvi11g0796 347 ProSiteProfiles AP2/ERF domain profile. 45 108 IPR001471 GO:0003700|GO:0006355
Vvi11g0796 347 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 13 226 - -
Vvi11g0796 347 Pfam AP2 domain 143 194 IPR001471 GO:0003700|GO:0006355
Vvi11g0796 347 Pfam AP2 domain 45 100 IPR001471 GO:0003700|GO:0006355
Vvi11g0796 347 CDD AP2 143 204 IPR001471 GO:0003700|GO:0006355
Vvi11g0796 347 FunFam AP2-like ethylene-responsive transcription factor 44 110 - -
Vvi11g0796 347 SUPERFAMILY DNA-binding domain 143 204 IPR016177 GO:0003677
Vvi11g0796 347 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Vvi11g0796 347 PRINTS Ethylene responsive element binding protein signature 184 204 IPR001471 GO:0003700|GO:0006355
Vvi11g0796 347 SMART rav1_2 144 208 IPR001471 GO:0003700|GO:0006355
Vvi11g0796 347 SMART rav1_2 45 114 IPR001471 GO:0003700|GO:0006355
Vvi11g0796 347 ProSiteProfiles AP2/ERF domain profile. 144 202 IPR001471 GO:0003700|GO:0006355
Vvi11g0796 347 Gene3D AP2/ERF domain 143 204 IPR036955 GO:0003700|GO:0006355
Vvi11g0796 347 Gene3D AP2/ERF domain 45 110 IPR036955 GO:0003700|GO:0006355
Vvi11g0796 347 MobiDBLite consensus disorder prediction 1 45 - -
Vvi11g0796 347 MobiDBLite consensus disorder prediction 1 28 - -
Vvi11g0796 347 FunFam AP2-like ethylene-responsive transcription factor 143 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0796 Vvi-Chr11 9496580 9499281 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0796 41 206 AP2-EREBP Transcription Factor Family AT5G57390 71.598 5.58e-86 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vvi11g0796 AP2 7.5e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0796 K09285 - vvi:100255268 670.233