Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0788 ATGGCGCTGAGTCCGAAATGGGTTTTTGTTGTTCAAATCTTGTTGACTCTGATCAATCTGAATAGAGCCACTTCTTCTTCGGACCCTCTTGTTCAGCAAGAGTTGGACAAGGTCCTTCAGCTCCCAGGCCAAACCTTTAATATCTCCTTTGCACACTATGCTGGGTACGTCACAGTGAATGAGTACACTGGGAGGGCTCTATTCTACTGGTTCATTGAGGCTGCTGAAGACCCTTCTTCTAAGCCTCTGGTTCTTTGGCTCAATGGAGGGCCTGGATGTTCATCCATTGCTTATGGGCAGTCGGAGGAAATAGGGCCGTTTCACATCAAGGAAGATGGGAAGACCCTTTATTTGAATCCATACTCTTGGAATCAAGCTGCCAACATTCTATTTCTTGACTTCCCTGTTGGAGTAGGCTTTTCATATTCAAATTCTTCCTTTGATATATCAAGCAATGGAGATCTAAGGACCGCTAAGGACTCATTAAAATTTTTATTGGAGTGGTTTGAGCGTTTTCCACAATATAAAGGAAGGGACTTCTACATTACAGGAGAGAGTTATGCAGGGCATTATGTTCCTCAGCTAAGCCAAGCAATTGTAAGGTACAATTTCGCAACAAAGGCAAAGTCAATTAATCTAAAGGGTTACATGGTGGGAAATGCTCTGACCGATGATTTCCATGACCACTTGGGGTTATTCCAGTTTATGTGGTCAGTTGGTATGATTTCTGATCAAACATACAAGCTACTGAATGTGTTTTGCGACTCCCAATCATTTATACTGTCCTCAGAGTTGTGTGATAAGATTATGGACATTGCTAGAGAGGAAATTGGAAACATTGACCTATACAGCATTTTTACTCCTCCCTGCAGTGTCAAAATTGGATTTTCGAATCAGCTGATGAAAAAATTGATTATGGCCAGTGGCATCAGTCGGAAGTATGATCCATGCACAGAGCAGCACTCAGCTGTGTACTACAATCTACCTGAGGTTCAACAAGCACTTCATGTTTATGTTGATAATGCAACATTTAAATGGGCAACCTGCAGTGATGAGGTTTCTACTACTTGGAAAGATTCTCCTAGGTCGGTGCTAAACATTTATCGTGAGCTGATACATGCGAGACTCCGTATTTGGATATTCAGTGGTGATACTGACGCCGTAATCCCAGTTACATCCACCCGATACAGTATTGATGCTCTCAAGCTTCCCACTGTGAGCCCATGGCGAGCTTGGTATGATGACGGACAGGTTGGAGGATGGACCCAAGATTATGCAGGGCTTACCTTCGTTACAGTGAGGGGAGCAGGGCATGAAGTTCCTCTGCATAAACCCAAACAAGCGTTCACACTCTTCAAGGCCTTCTTATCAGGAGCCCCAATGCCCTACATGGAACAAGTAAGCTACTCTTGA 1413 0.4367 MALSPKWVFVVQILLTLINLNRATSSSDPLVQQELDKVLQLPGQTFNISFAHYAGYVTVNEYTGRALFYWFIEAAEDPSSKPLVLWLNGGPGCSSIAYGQSEEIGPFHIKEDGKTLYLNPYSWNQAANILFLDFPVGVGFSYSNSSFDISSNGDLRTAKDSLKFLLEWFERFPQYKGRDFYITGESYAGHYVPQLSQAIVRYNFATKAKSINLKGYMVGNALTDDFHDHLGLFQFMWSVGMISDQTYKLLNVFCDSQSFILSSELCDKIMDIAREEIGNIDLYSIFTPPCSVKIGFSNQLMKKLIMASGISRKYDPCTEQHSAVYYNLPEVQQALHVYVDNATFKWATCSDEVSTTWKDSPRSVLNIYRELIHARLRIWIFSGDTDAVIPVTSTRYSIDALKLPTVSPWRAWYDDGQVGGWTQDYAGLTFVTVRGAGHEVPLHKPKQAFTLFKAFLSGAPMPYMEQVSYS* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0788 470 Gene3D - 317 355 - -
Vvi11g0788 470 Gene3D alpha/beta hydrolase 32 292 IPR029058 -
Vvi11g0788 470 FunFam Carboxypeptidase 33 292 - -
Vvi11g0788 470 FunFam Carboxypeptidase 364 458 - -
Vvi11g0788 470 FunFam Carboxypeptidase 314 461 - -
Vvi11g0788 470 ProSitePatterns Serine carboxypeptidases, histidine active site. 428 445 IPR033124 GO:0004185
Vvi11g0788 470 ProSitePatterns Serine carboxypeptidases, serine active site. 182 189 IPR018202 GO:0004185
Vvi11g0788 470 Gene3D - 364 458 - -
Vvi11g0788 470 Pfam Serine carboxypeptidase 42 458 IPR001563 GO:0004185|GO:0006508
Vvi11g0788 470 PRINTS Carboxypeptidase C serine protease (S10) family signature 428 441 IPR001563 GO:0004185|GO:0006508
Vvi11g0788 470 PRINTS Carboxypeptidase C serine protease (S10) family signature 119 131 IPR001563 GO:0004185|GO:0006508
Vvi11g0788 470 PRINTS Carboxypeptidase C serine protease (S10) family signature 132 142 IPR001563 GO:0004185|GO:0006508
Vvi11g0788 470 PRINTS Carboxypeptidase C serine protease (S10) family signature 168 193 IPR001563 GO:0004185|GO:0006508
Vvi11g0788 470 SUPERFAMILY alpha/beta-Hydrolases 38 461 IPR029058 -
Vvi11g0788 470 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 37 445 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0788 Vvi-Chr11 9327805 9351634 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0788 327 461 Calmodulin-binding Proteins AT2G22960 29.577 6.24e-15 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0788 K16297 - vvi:100263885 961.829