Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0778 ATGGCCCTTCAATATCCTCCATCCTATTCCTCACTCCCCCGACTCATCATCATTCTTTGCTTCTTCATCATTCTGTATTTCCCTTTTTGTTCAACATCATCGTCATTTCATGTCTCTTCTACATCTGCTTTTGCTTCTACCACTTCTTTGATTATTGAGCAAGAAAAAGAAGCACTTGCTCTTCTAACATGGAAATCCAGCCTTCATATTCGATCACAATCTTTCCTCTCTTCTTGGTCTGGAGTTTCCCCATGCAATAATTGGTTTGGAGTTACTTGCCACAAGTCAAAAAGTGTCTCCAGTTTAAACCTTGAAAGTTGTGGTCTAAGAGGTACGCTCTACAATCTCAATTTCTTATCACTCCCCAATCTTGTCACTCTTGATCTTTATAACAACTCGTTCTATGGAATCATTCCCACCCACATTAGTAATCTTTCCAAATTTATCACCATCCTTGACTTGGGTTTCAATAATTTTGCTGGTCTCATACCTCACCAAGTTGGATTGCTAACATCTCTTATTTTTCTTGCATTGCCTTCCAACCATTTAAGAGGTCAAATCCCTCCTTCAATAGGAAACTTGAGGAACTTAACCAGTTTGTATCTTTATAGCAATGAGTTTTATGGTTTCATCCCTCAAGAAATTGGATTGTTAAGATCTCTTAATAACCTTGTGTTGTCAACTAACAATCTTAGTGGTCCCATCCCACCTTCCATAGGAAACTTGAGGAACTTAACCACTTTGTACCTTCATACTAACAAACTTTCTGGTTCCATCCCTAAAGAAATTGGATTGTTGAGATCTCTAAATGATCTTGAGTTGTCAGCTAACAATCTTAGTGGTCCCATTCCTCATTCCATAGGAAATTTGAGGAATTTAACCACTTTGTACCTTCATACTAACAAACTTTCTGGTTCCATCCCTCAAGAAATTGGATTGTTGAGATCTCTTAATAATCTTAAGTTGTCAACTAACAATCTTAGTGGTCCCATCCCGCCTTCAATAGGAAACTTGAGGAATTTAACCACTTTGTACCTTCATACTAACAAACTTTCTGGTTCCATCCCTCAAGAAATTGGATTGTTGAGATCTCTTAATGATCTTGAGTTGTCAGCTAACAATCTTAGTGGTCCCATCCCTCCTTCCATAGGAAATTTGAGGAATTTAACCACTTTGTACCTTCATACTAACAAACTTTCTGGTTCCATCCCTCAAGAAATTGGATTGTTGAGATCTCTTAATGATCTTGAGTTGTCAACTAACAATCTTAATGGTCCCATCCCACCTTCCATAGGAAACTTGAGGAATTTAACCACTTTGTACCTTCATACTAACAAACTTTCTGGTTCCATCCCTAAAGAAATTGGAATGTTGAGATCTCTTAATGATCTTGAGTTGTCAACTAACAATCTCAATGGTCCCATCCCACCTTCCATAGGAAAATTGAGGAATTTAACCACTTTGTACCTTCATAATAACAAACTTTCTGGTTCCATTCCTCTAGAAATTGGATTATTGAGATCTCTCTTTAATCTTTCATTGTCAACAAACAATCTCAGTGGTCCCATCCCTCCTTTCATAGGAAACTTGAGGAATTTAACCAAATTGTATCTTGATAATAACAGATTTTCTGGTTCCATCCCTCGAGAAATTGGATTGTTGAGATCTCTTCATGATCTTGCACTAGCAACTAATAAACTCAGTGGCCCCATTCCTCAAGAAATTGATAATCTCATACATTTGAAATCCTTGCACTTAGAAGAGAACAATTTTACTGGCCATTTACCTCAACAAATGTGTCTAGGTGGAGCACTTGAAAATTTTACAGCCATGGGGAACCATTTTACCGGTCCTATTCCAATGAGCTTGAGAAATTGCACTAGCTTATTTAGAGTTCGGCTTGAAAGAAACCAACTCGAAGGAAACATAACTGAAGTTTTTGGCGTATACCCAAACTTGAATTTTATGGATTTGAGTTCCAACAATTTGTATGGTGAGCTTTCTCATAAATGGGGGCAATGTGGTAGCCTAACAAGCCTGAACATATCCCACAATAATTTGTCTGGTATCATACCACCTCAACTTGGGGAAGCAATTCAACTGCATCGACTTGATCTCTCTTCAAATCATCTGCTCGGGAAGATCCCTAGAGAATTGGGTAAGCTAACATCAATGTTCCATTTGGTGTTAAGCAACAACCAACTTTCAGGCAACATTCCTTTGGAGGTGGGAAATCTTTTTAATCTTGAACATCTTAGCTTGACATCAAACAACTTAAGTGGCTCAATCCCTAAACAACTAGGAATGCTTTCCAAACTATTCTTTCTCAACTTGAGCAAGAATAAATTTGGGGAAAGCATTCCTGATGAGATTGGGAACATGCATTCCCTTCAAAATCTCGATCTCAGTCAAAACATGCTGAATGGGAAGATACCACAGCAGCTTGGAGAACTACAACGCTTAGAAACATTGAATCTCTCCCACAATGAACTCTCTGGTTCCATCCCATCCACTTTCGAAGATATGTTGAGTTTGACATCTGTTGATATATCTTCTAATCAGTTGGAGGGACCTCTCCCTGACATCAAAGCCTTTCAGGAGGCTCCATTTGAGGCATTCATGAGCAATGGTGGTTTATGTGGCAATGCCACTGGTCTGAAGCCCTGTATCCCATTCACACAGAAGAAGAACAAAAGGTCTATGATTTTGATTATCTCCAGCACCGTATTTCTTCTATGCATTTCCATGGGAATTTATTTTACACTTTACTGGAGAGCAAGGAACAGAAAAGGCAAGTCCAGTGAAACACCATGTGAAGATCTATTTGCAATATGGGACCATGATGGAGGGATATTGTATCAAGATATCATTGAGGTGACTGAGGAATTCAACTCTAAATATTGTATTGGGAGTGGAGGACAGGGCACAGTTTATAAGGCTGAGCTGCCAACTGGTCGGGTTGTTGCTGTGAAAAAGCTTCACCCACCACAAGATGGTGAGATGAGTAGTTTGAAAGCTTTTACAAGTGAAATTCGGGCCTTAACAGAAATTCGACATCGAAACATTGTGAAGTTTTATGGCTATTGCTCACATGCAAGGCACTCGTTTTTGGTCTATAAGCTGATGGAAAAGGGAAGCCTAAGAAACATTCTAAGCAACGAGGAAGAAGCAATTGGGTTGGATTGGATTAGGAGGCTAAATATTGTGAAAGGTGTGGCGGAGGCATTATCTTATATGCATCATGATTGTTCACCCCCTATAATTCACAGGGACATATCCAGTAACAATGTTTTATTGGACTCTGAATATGAGGCTCATGTATCGGACTTCGGCACAGCAAGGCTTTTAAAGCCAGACTCATCATCCAATTGGACCTCATTCGCAGGCACCTTTGGGTATAGTGCTCCAGAGCTTGCTTACACCACCCAGGTGAATAATAAAACTGATGTTTATAGCTATGGGGTGGTGACATTGGAAGTAATTATGGGTAAACATCCTGGTGATCTCATCTCATCCCTGTCATCAGCATCATCATCGTCATCAGTCACAGCAGTGGCTGATTCTTTGTTGTTGAAGGATGCGATAGACCAACGCCTCTCACCTCCCATACATCAAATCAGTGAGGAAGTTGCATTTGCTGTGAAGCTAGCATTTGCGTGCCAGCATGTTAACCCCCATTGTCGGCCAACCATGAGGCAAGTTTCTCAGGCACTATCAAGTCAGAAGCCACCTTTGCAAAAACCATTCCCCATTATTACATTGAGAGAGCTGTTTCAGGGGTGA 3783 0.3989 MALQYPPSYSSLPRLIIILCFFIILYFPFCSTSSSFHVSSTSAFASTTSLIIEQEKEALALLTWKSSLHIRSQSFLSSWSGVSPCNNWFGVTCHKSKSVSSLNLESCGLRGTLYNLNFLSLPNLVTLDLYNNSFYGIIPTHISNLSKFITILDLGFNNFAGLIPHQVGLLTSLIFLALPSNHLRGQIPPSIGNLRNLTSLYLYSNEFYGFIPQEIGLLRSLNNLVLSTNNLSGPIPPSIGNLRNLTTLYLHTNKLSGSIPKEIGLLRSLNDLELSANNLSGPIPHSIGNLRNLTTLYLHTNKLSGSIPQEIGLLRSLNNLKLSTNNLSGPIPPSIGNLRNLTTLYLHTNKLSGSIPQEIGLLRSLNDLELSANNLSGPIPPSIGNLRNLTTLYLHTNKLSGSIPQEIGLLRSLNDLELSTNNLNGPIPPSIGNLRNLTTLYLHTNKLSGSIPKEIGMLRSLNDLELSTNNLNGPIPPSIGKLRNLTTLYLHNNKLSGSIPLEIGLLRSLFNLSLSTNNLSGPIPPFIGNLRNLTKLYLDNNRFSGSIPREIGLLRSLHDLALATNKLSGPIPQEIDNLIHLKSLHLEENNFTGHLPQQMCLGGALENFTAMGNHFTGPIPMSLRNCTSLFRVRLERNQLEGNITEVFGVYPNLNFMDLSSNNLYGELSHKWGQCGSLTSLNISHNNLSGIIPPQLGEAIQLHRLDLSSNHLLGKIPRELGKLTSMFHLVLSNNQLSGNIPLEVGNLFNLEHLSLTSNNLSGSIPKQLGMLSKLFFLNLSKNKFGESIPDEIGNMHSLQNLDLSQNMLNGKIPQQLGELQRLETLNLSHNELSGSIPSTFEDMLSLTSVDISSNQLEGPLPDIKAFQEAPFEAFMSNGGLCGNATGLKPCIPFTQKKNKRSMILIISSTVFLLCISMGIYFTLYWRARNRKGKSSETPCEDLFAIWDHDGGILYQDIIEVTEEFNSKYCIGSGGQGTVYKAELPTGRVVAVKKLHPPQDGEMSSLKAFTSEIRALTEIRHRNIVKFYGYCSHARHSFLVYKLMEKGSLRNILSNEEEAIGLDWIRRLNIVKGVAEALSYMHHDCSPPIIHRDISSNNVLLDSEYEAHVSDFGTARLLKPDSSSNWTSFAGTFGYSAPELAYTTQVNNKTDVYSYGVVTLEVIMGKHPGDLISSLSSASSSSSVTAVADSLLLKDAIDQRLSPPIHQISEEVAFAVKLAFACQHVNPHCRPTMRQVSQALSSQKPPLQKPFPIITLRELFQG* 1261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0778 1260 Gene3D Transferase(Phosphotransferase) domain 1 1042 1247 - -
Vvi11g0778 1260 ProSiteProfiles Leucine-rich repeat profile. 292 314 IPR001611 GO:0005515
Vvi11g0778 1260 Gene3D Ribonuclease Inhibitor 564 891 IPR032675 -
Vvi11g0778 1260 Gene3D Ribonuclease Inhibitor 313 473 IPR032675 -
Vvi11g0778 1260 Pfam Protein kinase domain 966 1236 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0778 1260 ProSiteProfiles Protein kinase domain profile. 963 1245 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0778 1260 FunFam Leucine-rich repeat receptor protein kinase MSP1 926 1041 - -
Vvi11g0778 1260 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1087 1099 IPR008266 GO:0004672|GO:0006468
Vvi11g0778 1260 SUPERFAMILY L domain-like 311 639 - -
Vvi11g0778 1260 PANTHER LEUCINE RICH REPEAT KINASE 2 527 1247 - -
Vvi11g0778 1260 SMART LRR_typ_2 242 266 IPR003591 -
Vvi11g0778 1260 SMART LRR_typ_2 386 410 IPR003591 -
Vvi11g0778 1260 SMART LRR_typ_2 674 698 IPR003591 -
Vvi11g0778 1260 SMART LRR_typ_2 770 794 IPR003591 -
Vvi11g0778 1260 SMART LRR_typ_2 818 841 IPR003591 -
Vvi11g0778 1260 SMART LRR_typ_2 290 314 IPR003591 -
Vvi11g0778 1260 SMART LRR_typ_2 530 554 IPR003591 -
Vvi11g0778 1260 SMART LRR_typ_2 338 362 IPR003591 -
Vvi11g0778 1260 SMART LRR_typ_2 722 746 IPR003591 -
Vvi11g0778 1260 SMART LRR_typ_2 121 145 IPR003591 -
Vvi11g0778 1260 SMART LRR_typ_2 482 506 IPR003591 -
Vvi11g0778 1260 SMART LRR_typ_2 434 458 IPR003591 -
Vvi11g0778 1260 SMART LRR_typ_2 578 602 IPR003591 -
Vvi11g0778 1260 SMART LRR_typ_2 194 218 IPR003591 -
Vvi11g0778 1260 Pfam Leucine rich repeat N-terminal domain 56 93 IPR013210 -
Vvi11g0778 1260 ProSiteProfiles Leucine-rich repeat profile. 484 506 IPR001611 GO:0005515
Vvi11g0778 1260 SUPERFAMILY L domain-like 56 329 - -
Vvi11g0778 1260 SMART LRR_sd22_2 434 466 - -
Vvi11g0778 1260 SMART LRR_sd22_2 121 147 - -
Vvi11g0778 1260 SMART LRR_sd22_2 482 503 - -
Vvi11g0778 1260 SMART LRR_sd22_2 386 418 - -
Vvi11g0778 1260 SMART LRR_sd22_2 794 820 - -
Vvi11g0778 1260 SMART LRR_sd22_2 338 370 - -
Vvi11g0778 1260 SMART LRR_sd22_2 266 292 - -
Vvi11g0778 1260 FunFam Probable leucine-rich repeat receptor-like protein kinase At5g63930 473 573 - -
Vvi11g0778 1260 Gene3D Ribonuclease Inhibitor 477 563 IPR032675 -
Vvi11g0778 1260 Gene3D Ribonuclease Inhibitor 212 311 IPR032675 -
Vvi11g0778 1260 Gene3D Ribonuclease Inhibitor 53 211 IPR032675 -
Vvi11g0778 1260 FunFam MDIS1-interacting receptor like kinase 2 1042 1244 - -
Vvi11g0778 1260 PRINTS Leucine-rich repeat signature 818 831 - -
Vvi11g0778 1260 PRINTS Leucine-rich repeat signature 677 690 - -
Vvi11g0778 1260 Gene3D Phosphorylase Kinase; domain 1 928 1040 - -
Vvi11g0778 1260 SUPERFAMILY RNI-like 571 858 - -
Vvi11g0778 1260 FunFam Nuclear pore complex protein NUP107 211 309 - -
Vvi11g0778 1260 ProSiteProfiles Leucine-rich repeat profile. 388 410 IPR001611 GO:0005515
Vvi11g0778 1260 Pfam Leucine rich repeat 796 855 IPR001611 GO:0005515
Vvi11g0778 1260 SUPERFAMILY Protein kinase-like (PK-like) 950 1238 IPR011009 -
Vvi11g0778 1260 FunFam Probable leucine-rich repeat receptor-like protein kinase At1g35710 54 210 - -
Vvi11g0778 1260 ProSiteProfiles Leucine-rich repeat profile. 340 362 IPR001611 GO:0005515
Vvi11g0778 1260 FunFam Uncharacterized protein 315 462 - -
Vvi11g0778 1260 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 580 893 - -
Vvi11g0778 1260 ProSiteProfiles Leucine-rich repeat profile. 244 266 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0778 Vvi-Chr11 9016105 9019990 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0778 170 716 Receptor kinase-like Gene Family AT4G08850 40.385 4.37e-105 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi11g0778 Pkinase 3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0778 - - vvi:100265559 2434.45