Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0777 ATGCACCATGATTGCTCCCCTCCTTTAGTTCATCGAGACATATCGAGCAACAATGTTCTGTTAGATTCAAAAAGTAAAGCTCATGTATCCAACTTCGGAACAGCTCGGATTCTGAAGTCAGACTCATCTAATTGGACGTCATTTGCAGGAACTTTTGGTTATATTGCTCCAGAACTTGCTTACGTGTCAAATGTGGATAATAAAACAGATGTTTACAGCTTTGGAGTGGTAACATTGGAAGTTATTTTTGGAAAGCATCCTGGGGAACTCATCTCATCACTCTTATCATCAGTGTCTTCATCATCCTCATCGCCATCAACTATCTATCATTTACTGTTGAATGAAAAGATAGACCAGCGTCTCGCACCTCCTGTAAATCAAGTGGCCGAGGAAGTAGTGGTTGTAGTGAAGCTAGCACTTGCATGCTAA 429 0.4103 MHHDCSPPLVHRDISSNNVLLDSKSKAHVSNFGTARILKSDSSNWTSFAGTFGYIAPELAYVSNVDNKTDVYSFGVVTLEVIFGKHPGELISSLLSSVSSSSSSPSTIYHLLLNEKIDQRLAPPVNQVAEEVVVVVKLALAC* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0777 142 Gene3D Transferase(Phosphotransferase) domain 1 1 142 - -
Vvi11g0777 142 SUPERFAMILY Protein kinase-like (PK-like) 1 93 IPR011009 -
Vvi11g0777 142 PANTHER LEUCINE RICH REPEAT KINASE 2 1 142 - -
Vvi11g0777 142 ProSitePatterns Tyrosine protein kinases specific active-site signature. 9 21 IPR008266 GO:0004672|GO:0006468
Vvi11g0777 142 ProSiteProfiles Protein kinase domain profile. 1 142 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0777 142 Pfam Protein kinase domain 9 89 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0777 Vvi-Chr11 8974480 8975326 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0777 1 142 Receptor kinase-like Gene Family AT1G08590 36.667 9.32e-30 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi11g0777 Pkinase 3e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0777 - - vvi:100855152 210.69