Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0776 ATGGGAATGCTATCTGATCTTCAACATCTTAACTTGGCATCAAACAACTTAAGTGGCTCAATTCCTAAACAACTGGGAGAGTGTTGGAAATTATTGTACTTCAATTTGAGCAAGAATAATTTTGAAGAAAGCATTCCATCTGAGATCGGCAATATGATCTCTCTTGGAAGTCTCGATCTTAGTGAAAATATGCTTACAGGAGAAATACCACAGCAGCTTGGCAAATTGCAGAACCTAGAAATATTGAATCTCTCTCATAATGGACTCTCTGGTTCTATACCATCCACTTTCAAGGATATGCTGGGCCTTAGTTCTGTTGATATATCTTACAACCAATTAGAGGGTCCTCTTCCCAACATCAAAGCCTTTCGAGAGGCTTCGTTTGAGGCACTTAGAAACAATAGTGGTTTGTGTGGAACCGCTGCTGTTCTGATGGTCTGTATCTCCTCTATAGAGAACAAAGCTAGTGAGAAGGACCATAAAATTGTGATTTTGATCATAATCCTTATCTCGAGCATTCTATTTCTTCTCTTCGTTTTCGTGGGACTTTATTTTCTTCTTTGTCGAAGGGTGAGGTTCAGAAAACACAAGTCAAGAGAGACTTCTTGTGAAGATCTATTTGCAATATGGGGCCATGATGGAGAGATGTTGTATGAAGACATCATCAAGGTAACTGAGGAGTTCAATTCGAAATATTGCATTGGTGGGGGAGGATATGGAACAGTTTATAAGGCCGAGCTACCAACTGGTAGAGTTGTTGCTGTGAAAAAGCTTCATCCACAACAAGATGGGGGGATGGCTGATTTGAAAGCTTTTACTGCTGAGATTCGTGCTTTAACAGAAATGAGACATCGCAACATTGTGAAACTCTACGGGTTTTGTTCACATGCAGAACACACATTTTTAATTTATGAGTTCATGGAAAAGGGAAGCCTAAGACACGTTCTAAGCAATGAGGAAGAAGCACTGGAATTGGACTGGAGCATGAGGCTGAATATTGTGAAAGGTGTCGCGGAGGCATTATCTTACATGCATCATGATTGCTCACCCCCTATAATTCATAGGGATATATCCAGTAGCAATGTTTTACTGGATTCTGAATACGAAGGTCACGTATCGGACTTTGGCACAGCAAGGCTCTTAAAGCCTGACTCCTCCAATTGGACCTCATTTGCAGGCACCTTTGGGTACACTGCTCCAGAGCTTGCTTACACATTAGAAGTGAATGATAAAACCGATGTTTTTAGCTTTGGAGTGGTAACATTGGAAGTGCTTGTGGGAAGACATCCTGGTGATCTCATCTCATACCTATCATCCTTGTCGTTATCATCCTCATCACAATCTTCTTCAACGTCTTATTTTTCACTGTTGAAAGATGTGTTAGACCCTCGCCTGTCACCTCCCACAGATCAAGTCGTTGAAGATGTTGTCTTTGCTATGAAGCTAGCATTTGCATGCTTGCATGCTAATCCCAAATCTCGGCCAACCATGCGACAAGTTTCTCAAGCACTATCCAGTAAGCAGAAGCCTCAGCAGCAGGTTTCTAGCTCAGCATCTCAACCCAGCAGCTCAACCTCAGCATCTCAACTTCCAGCTGAATCTCTCAACCTCCCAACCTCCTAA 1623 0.4202 MGMLSDLQHLNLASNNLSGSIPKQLGECWKLLYFNLSKNNFEESIPSEIGNMISLGSLDLSENMLTGEIPQQLGKLQNLEILNLSHNGLSGSIPSTFKDMLGLSSVDISYNQLEGPLPNIKAFREASFEALRNNSGLCGTAAVLMVCISSIENKASEKDHKIVILIIILISSILFLLFVFVGLYFLLCRRVRFRKHKSRETSCEDLFAIWGHDGEMLYEDIIKVTEEFNSKYCIGGGGYGTVYKAELPTGRVVAVKKLHPQQDGGMADLKAFTAEIRALTEMRHRNIVKLYGFCSHAEHTFLIYEFMEKGSLRHVLSNEEEALELDWSMRLNIVKGVAEALSYMHHDCSPPIIHRDISSSNVLLDSEYEGHVSDFGTARLLKPDSSNWTSFAGTFGYTAPELAYTLEVNDKTDVFSFGVVTLEVLVGRHPGDLISYLSSLSLSSSSQSSSTSYFSLLKDVLDPRLSPPTDQVVEDVVFAMKLAFACLHANPKSRPTMRQVSQALSSKQKPQQQVSSSASQPSSSTSASQLPAESLNLPTS* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0776 540 SUPERFAMILY L domain-like 3 139 - -
Vvi11g0776 540 CDD STKc_IRAK 234 504 - -
Vvi11g0776 540 ProSitePatterns Protein kinases ATP-binding region signature. 234 257 IPR017441 GO:0005524
Vvi11g0776 540 Gene3D Ribonuclease Inhibitor 1 155 IPR032675 -
Vvi11g0776 540 ProSiteProfiles Protein kinase domain profile. 228 504 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0776 540 Pfam Protein kinase domain 231 502 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0776 540 FunFam Leucine-rich repeat receptor protein kinase MSP1 191 306 - -
Vvi11g0776 540 MobiDBLite consensus disorder prediction 495 540 - -
Vvi11g0776 540 FunFam MDIS1-interacting receptor like kinase 2 307 510 - -
Vvi11g0776 540 PRINTS Leucine-rich repeat signature 55 68 - -
Vvi11g0776 540 PRINTS Leucine-rich repeat signature 76 89 - -
Vvi11g0776 540 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 22 147 - -
Vvi11g0776 540 Gene3D Transferase(Phosphotransferase) domain 1 307 529 - -
Vvi11g0776 540 SUPERFAMILY Protein kinase-like (PK-like) 213 504 IPR011009 -
Vvi11g0776 540 Pfam Leucine rich repeat 54 113 IPR001611 GO:0005515
Vvi11g0776 540 PANTHER LEUCINE RICH REPEAT KINASE 2 2 511 - -
Vvi11g0776 540 ProSitePatterns Tyrosine protein kinases specific active-site signature. 352 364 IPR008266 GO:0004672|GO:0006468
Vvi11g0776 540 SMART LRR_typ_2 76 99 IPR003591 -
Vvi11g0776 540 SMART LRR_typ_2 4 28 IPR003591 -
Vvi11g0776 540 Gene3D Phosphorylase Kinase; domain 1 190 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0776 Vvi-Chr11 8926056 8928094 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0776 3 400 Receptor kinase-like Gene Family AT4G08850 50.617 3.44e-131 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi11g0776 Pkinase 3.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0776 - - vvi:100267270 967.607