Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0773 ATGGGTCCTTATGTCAATGGGAAGGAGTGTGTATATGTTAGTGGAGTTGTTCAAAGTGTCTCTCCTACAATGAGGATACGAAGGAAGAGTCACAATGACATTGTTCCTAAGCGTGATATAACTTTTGCGGACAAGACGAAGAAGACTGTTGTGGTCTCTTTGTGGAATGATCATGCTACTAATGTAGGGCAGGAGTTGTTGGATAATGCTGATAAATTTCCAATTGTTGCAATTAAATCTCTCAAAGTTGGAGACTTCCAAGGAGCTTCAATGGCTTCTATTAGGTCTGATATCAGTCCATCTAAGGGTGGAGTGAGGTCCATGTACTATGACAGGGTTTCCCTTTCTCATGTAACCAGCAACCCATCTTTGGGTGAAGACAAGCCTTCCTTTTTTAGCATCAGAGCATACATAAGCTTCATCAAGCCTGATCAAACAATGTGGTACCGGGCTTGTAAGACATGCAACAAGAAAGTCACAGATGCTATTGGATCTGGGTATTGGTGTGAAGGATGCCAAAAGAATGATGATGAGTGCAGTTTAAGGTACATAATGGTAGTGAAAGTTTCAGATGCTAGTGGTGAAGCTTGGCTTTCTCTGTTCAATGACCAAGCAGAGAGAATATTTGGGTGCTCTGCTGATGAGCTTGATAAGCTGAAATCACAGGAGGGAGAAGAGAACCTATTCCAACAGAAATTGAAGGAAGCTATTTGGGTCCCTCAGCTTTTCCGGATTAGTGTTGCACAACATGAGTACATGAACGAGAAAAGGCAGAGGATAACAGCCAGGGCTGTTGTTCCAGTTGATTTTGCAGCTGAATCCAGATTACTGTTGGAGGAGATATCAAAGATGAAGACTTCACAATAG 867 0.4221 MGPYVNGKECVYVSGVVQSVSPTMRIRRKSHNDIVPKRDITFADKTKKTVVVSLWNDHATNVGQELLDNADKFPIVAIKSLKVGDFQGASMASIRSDISPSKGGVRSMYYDRVSLSHVTSNPSLGEDKPSFFSIRAYISFIKPDQTMWYRACKTCNKKVTDAIGSGYWCEGCQKNDDECSLRYIMVVKVSDASGEAWLSLFNDQAERIFGCSADELDKLKSQEGEENLFQQKLKEAIWVPQLFRISVAQHEYMNEKRQRITARAVVPVDFAAESRLLLEEISKMKTSQ* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0773 288 Gene3D - 99 284 IPR012340 -
Vvi11g0773 288 CDD RPA1_DBD_B 15 96 - -
Vvi11g0773 288 SUPERFAMILY Nucleic acid-binding proteins 10 93 IPR012340 -
Vvi11g0773 288 PANTHER REPLICATION FACTOR A 1, RFA1 11 248 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vvi11g0773 288 FunFam Replication protein A subunit 103 284 - -
Vvi11g0773 288 SUPERFAMILY Nucleic acid-binding proteins 109 284 IPR012340 -
Vvi11g0773 288 Pfam Replication factor-A C terminal domain 131 277 IPR013955 -
Vvi11g0773 288 Pfam Replication protein A OB domain 8 96 IPR031657 -
Vvi11g0773 288 CDD RPA1_DBD_C 119 283 IPR047192 -
Vvi11g0773 288 FunFam - 24 102 - -
Vvi11g0773 288 Gene3D - 3 98 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0773 Vvi-Chr11 8704405 8706145 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0773 1 288 Core DNA Replication Machinery Family AT5G08020 64.596 1.75e-148 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0773 K07466 - vvi:100255412 532.332