Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0770 ATGGGCTTGAGTAGATTTTCTCCATTAATCAGTTTTCTTTACTGTTTCATTGCTGTTTTGGTTGGAGTATATAGTGAGGAAAATGCTCGAATTTTTCATGATCGAGCATCGCTTCTTGCCTTCCTGTCTGGGGTTGTTTTAGACCCTGAAAACACGCTTAAGAGCTGGAACTCTTCGGGCGTTCATGTCTGCAACTGGTCCGGAGTAAGGTGCAACAATGGCAGAGATCAAGTGATTGAACTCGACCTAAGAAGCCAGGCCCTTCGGGGCACCATTTCACCGGCTATATCCAACCTTTCCTTCTTAAGGGTTCTTGATTTGTCTGGTAACTTCTTTGAAGGTGAGATTCCAGCAGAGATAGGCGCACTTTTCAGGCTCCAACAGCTGAGTTTATCGTCGAATCTTCTTCGAGGGAAGATTCCAGCTGAATTAGGCTTGCTTCGTGAGCTCGTGTATCTGAATTTGGGAAGTAACCAGCTGGTGGGTGAGATTCCAGTCTCACTTTTCTGCAATGGATCTTCTACTTTGGAGTATGTAGACTTCTCCAACAATTCTCTCAGTGGTGAAATTCCTTTGAAGAACTGTGAGCTCAAGGAATTAAGGTTTCTTCTGCTTTGGTCGAATCGACTTGTAGGTCATGTTCCACAAGCCCTTTCCAACTCCACTAAGCTGGAATGGCTTGACGTGGAATCGAACTTGCTAAGCGGGGAGTTGCCGTCAGGAATTGTACAGAAAATGCCGAATTTACAGATACTCTATCTGTCGTATAATGACTTTGTAAGCCATGATGGTAACACCAACCTTGAACCTTTTTTCGCTTCTTTAGTTAATTGTTCTAACTTTCAAGAACTCGAGTTAGGAGGAAACAATCTTGGTGGAGAGATACCTTCTATTATTGGTGATCTTTCTACTAGTCTTGCACAGATTCATCTTGATGAGAATCTCATCTATGGTCCAATTCCTGCTGATATTTCAAGGCTTGTCAATCTCACCCTCTTGAACTTGTCTAGTAATCTCTTAAATGGTTCTATTCCATCAGAGCTGTCCCCAATGGGAAGGCTGGAGAGGGTTTATTTTTCCAATAACTCGCTCTCTGGTGAGATTCCATCAGCTTTTGGTGACATTCCTCATCTGGGTCTTCTAGACTTATCGGAAAACAAGCTCTCTGGTTCAATCCCAGATAGTTTTGCCAATCTCTCACAGCTGAGAAGGCTGTTGCTTTATGAAAATCAGCTCTCAGGAACAATACCGCCAAGTCTAGGAAAATGCATTAACTTGGAAATTCTAGACCTTTCTCACAATAGAATTTCAGGTATGATTCCTAGTGAAGTTGCAGGCCTGCGGAGCTTGAAACTGTACTTGAATCTGTCTAGCAATCACTTACAAGGGCCCATACCCTTAGAGCTGAGTAAAATGGATATGCTGCTAGCTATGGATCTCTCATCGAACAACCTGTCCGGCACAATCCCCACACAGCTACGAAGCTGCATTGCTCTAGAGTACCTCAACCTTTCGGGTAATGTCTTACAAGGACCACTTCCAGTTTCAATAGGGCAGTTGCCTTATCTTCAAGAACTCGATGTATCTTCAAACCAATTGATTGGAGAAATACCGCAATCTCTGCAGGCATCTTCAACTCTCAAGTACCTGAATTTCTCCTTCAACAATTTCTCAGGGAACATATCAAACAAGGGGTCATTTTCCTCACTGACCATGGATTCTTTCCTGGGAAACGTTGGCCTTTGTGGGTCGATAAAAGGCATGCCAAACTGCCGAAGAAAACATGCTTACCATTTGGTCCTTTTGCCTATTCTCCTTTCAATATTTGCCACTCCCATATTGTGCATATTTGGGTACCCGTTCATGCACAAATCAGGAATCAGAAGGCCATTGGCAATATTTAACGGCACAGACATGGAAGAAGGAGAACAGGAAAGGAAAGAGCTCAAGTACCCCAGAATCACTCATAGGCAACTGGTTGAAGCCACCGGCGGCTTCAGCAGTTCAAGCCTGATTGGCTCAGGTCGTTTTGGGCATGTCTACAAGGGAGTTCTTCGAGATAATACAAGAATTGCTGTGAAGGTATTGGATTCAAGAATAGCTGCAGAAATTTCGGGGAGCTTTAAAAGAGAATGCCAAGTTCTGAAGAGAACCAGGCACCGAAATTTAATAAGGATCATTACAATTTGTAGCAAACCAGACTTCAAGGCTCTTGTTCTTCCACTTATGTCCAATGGCTGCCTGGAAAGGCATCTCTACCCAGGCAGAGACTTGGGCCATGGACTGAATTTGGTTCAGTTGGTCAGCATCTGCAGTGACGTAGCTGAAGGAGTGGCCTATCTGCATCATTATTCTCCTGTTAGAGTCGTGCACTGTGATCTCAAACCAAGCAATATTCTTCTCGATGAGGACATGACGGCTTTGGTAACCGATTTTGGGATTGCAAAGTTGGTAAGCGGAGATGAGGGGACTTCTGCTAATGATTCAACTTCCTACAGCTCTACTGATGGCTTGCTATGTGGATCAATTGGCTATATTGCTCCTGAGTATGGATTGGGAAAGCGGGCATCGACCCAGGGAGATGTTTACAGTTTTGGGGTCCTCCTGTTAGAGATTGTGACAGGGAAGCGTCCCACTGATGTTCTTTTCCACGATGGTTCAAGCTTACATGAATGGGTGAAGAGTCAGTACCCAAATAAGCTTGAGCCTATAGTTGAACAAGCATTGACAAGAGCTACACCACCTGCCACACCAGTTAATTGCAGCAGAATATGGCGTGATGCCATCTTGGAATTGATTGAGCTCGGTCTTATCTGCACACAATATATACCTGCAACAAGACCTAGCATGTTAGATGTAGCCAATGAAATGGTTCGTTTGAAGCAATATCTCTGTAATCATTCCTCACAAATGATCGAAGAGGCTTAA 2928 0.4392 MGLSRFSPLISFLYCFIAVLVGVYSEENARIFHDRASLLAFLSGVVLDPENTLKSWNSSGVHVCNWSGVRCNNGRDQVIELDLRSQALRGTISPAISNLSFLRVLDLSGNFFEGEIPAEIGALFRLQQLSLSSNLLRGKIPAELGLLRELVYLNLGSNQLVGEIPVSLFCNGSSTLEYVDFSNNSLSGEIPLKNCELKELRFLLLWSNRLVGHVPQALSNSTKLEWLDVESNLLSGELPSGIVQKMPNLQILYLSYNDFVSHDGNTNLEPFFASLVNCSNFQELELGGNNLGGEIPSIIGDLSTSLAQIHLDENLIYGPIPADISRLVNLTLLNLSSNLLNGSIPSELSPMGRLERVYFSNNSLSGEIPSAFGDIPHLGLLDLSENKLSGSIPDSFANLSQLRRLLLYENQLSGTIPPSLGKCINLEILDLSHNRISGMIPSEVAGLRSLKLYLNLSSNHLQGPIPLELSKMDMLLAMDLSSNNLSGTIPTQLRSCIALEYLNLSGNVLQGPLPVSIGQLPYLQELDVSSNQLIGEIPQSLQASSTLKYLNFSFNNFSGNISNKGSFSSLTMDSFLGNVGLCGSIKGMPNCRRKHAYHLVLLPILLSIFATPILCIFGYPFMHKSGIRRPLAIFNGTDMEEGEQERKELKYPRITHRQLVEATGGFSSSSLIGSGRFGHVYKGVLRDNTRIAVKVLDSRIAAEISGSFKRECQVLKRTRHRNLIRIITICSKPDFKALVLPLMSNGCLERHLYPGRDLGHGLNLVQLVSICSDVAEGVAYLHHYSPVRVVHCDLKPSNILLDEDMTALVTDFGIAKLVSGDEGTSANDSTSYSSTDGLLCGSIGYIAPEYGLGKRASTQGDVYSFGVLLLEIVTGKRPTDVLFHDGSSLHEWVKSQYPNKLEPIVEQALTRATPPATPVNCSRIWRDAILELIELGLICTQYIPATRPSMLDVANEMVRLKQYLCNHSSQMIEEA* 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0770 975 Pfam Leucine rich repeat N-terminal domain 34 72 IPR013210 -
Vvi11g0770 975 ProSitePatterns Protein kinases ATP-binding region signature. 672 694 IPR017441 GO:0005524
Vvi11g0770 975 Gene3D Ribonuclease Inhibitor 31 172 IPR032675 -
Vvi11g0770 975 Pfam Protein kinase domain 668 885 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0770 975 Gene3D Ribonuclease Inhibitor 242 594 IPR032675 -
Vvi11g0770 975 ProSiteProfiles Leucine-rich repeat profile. 425 446 IPR001611 GO:0005515
Vvi11g0770 975 ProSitePatterns Serine/Threonine protein kinases active-site signature. 789 801 IPR008271 GO:0004672|GO:0006468
Vvi11g0770 975 Gene3D Ribonuclease Inhibitor 173 241 IPR032675 -
Vvi11g0770 975 SUPERFAMILY L domain-like 333 583 - -
Vvi11g0770 975 PRINTS Leucine-rich repeat signature 520 533 - -
Vvi11g0770 975 PRINTS Leucine-rich repeat signature 426 439 - -
Vvi11g0770 975 SUPERFAMILY L domain-like 271 364 - -
Vvi11g0770 975 Pfam Leucine rich repeat 199 259 IPR001611 GO:0005515
Vvi11g0770 975 Pfam Leucine rich repeat 353 412 IPR001611 GO:0005515
Vvi11g0770 975 Pfam Leucine rich repeat 478 533 IPR001611 GO:0005515
Vvi11g0770 975 Pfam Leucine Rich Repeat 102 121 IPR001611 GO:0005515
Vvi11g0770 975 Gene3D Transferase(Phosphotransferase) domain 1 743 973 - -
Vvi11g0770 975 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 32 196 - -
Vvi11g0770 975 SUPERFAMILY Protein kinase-like (PK-like) 648 956 IPR011009 -
Vvi11g0770 975 Gene3D Phosphorylase Kinase; domain 1 637 741 - -
Vvi11g0770 975 Pfam Leucine Rich repeat 422 437 IPR001611 GO:0005515
Vvi11g0770 975 SUPERFAMILY L domain-like 37 262 - -
Vvi11g0770 975 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 202 597 - -
Vvi11g0770 975 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 646 742 - -
Vvi11g0770 975 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 743 970 - -
Vvi11g0770 975 CDD STKc_IRAK 672 960 - -
Vvi11g0770 975 SMART serkin_6 666 964 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0770 975 SMART LRR_typ_2 197 221 IPR003591 -
Vvi11g0770 975 SMART LRR_typ_2 375 398 IPR003591 -
Vvi11g0770 975 SMART LRR_typ_2 399 423 IPR003591 -
Vvi11g0770 975 SMART LRR_typ_2 520 544 IPR003591 -
Vvi11g0770 975 SMART LRR_typ_2 327 351 IPR003591 -
Vvi11g0770 975 SMART LRR_typ_2 424 447 IPR003591 -
Vvi11g0770 975 SMART LRR_typ_2 246 269 IPR003591 -
Vvi11g0770 975 SMART LRR_typ_2 99 123 IPR003591 -
Vvi11g0770 975 SMART LRR_typ_2 147 171 IPR003591 -
Vvi11g0770 975 PANTHER OS04G0122200 PROTEIN 378 958 - -
Vvi11g0770 975 ProSiteProfiles Protein kinase domain profile. 666 964 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0770 Vvi-Chr11 8616499 8619634 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0770 34 962 Receptor kinase-like Gene Family AT3G47570 34.761 1.50e-161 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vvi11g0770 Pkinase 5.6e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0770 - - vvi:100257105 1869.36