Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0762 ATGGAAGCCAGTGCTGGCCTGGTCGCTGGATCCCATAACCGGAACGAGCTTGTTGTCATTCATGGCCATGAGGAGCCCAAGCCCTTGAGGTCTTTGAATGGTCAGGTGTGTGAGATATGCGGTGACGAAATCGGTCTGACGGTGGATGGAGAGGTGTTTGTGGCCTGCAATGAGTGTGGTTTTCCGGTTTGCCGGCCTTGCTATGAGTATGAAAGGAGAGAAGGGAGCCAGCTTTGCCCTCAGTGCAAGACCAGATTCAAGCGTCTCAAAGGGTGTGCAAGGGTGGAGGGGGATGACGATGAAGAAGACATTGATGATATTGAACATGAATTCAACATCGATGATGAACAAAACAAGAATAAGCTTATCGCAGAAGCTATGCTTCATGGGAAGATGAGCTATGGACGTGGCCCTGAAGATGACGATAACGCTCAATTCCCACCTGTTATAACTGGTGTTCGATCCAGACCTGTGAGTGGAGAGTTCCCAATTTCGTCTCATGCCCCTGGAGAGCAGGGGCTGTCATCTTCACTTCATAAACGTGTGCACCCTTATCCAGTGTCTGAACCAGGAAGCGCGAGATGGGATGAGAAGAAAGAGGGAGGGTGGAAAGAGCGAATGGATGACTGGAAAATGCAGCAAGGGAACCTCGGCCCTGACGCTGACGACTACAATGACCCTGACATGGCCATGATTGAGGAAGCGAGGCAGCCACTGTCAAGGAAAGTACCGATTGCTTCAAGCAAGGTCAACCCTTACAGAATGGTGATCGTGGCTCGGCTTCTTGTTTTGGCGTTCTTCCTTCGCTATAGAATTTTGAATCCTGTACATGATGCCCTTGGGCTTTGGCTAGTGTCTGTGATATGTGAGATCTGGTTTGCCTTCTCATGGATTCTTGATCAGTTCCCCAAGTGGTTCCCCATTGATCGCGAGACATATCTTGATCGCCTTTCTTTCAGGTATGAGAGGGAAGGGGAGCCCAATATGCTCTCTCCGGTGGATATCTTTGTCAGTACTGTGGATCCCTTGAAGGAACCTCCACTTGTTACAGCTAACACAGTTCTTTCAATCCTCGCCATGGACTACCCTGTCGACAAAATCTCATGCTACATCTCAGATGATGGAGCTTCCATCCTGACCTTTGAAGCACTCTCTGAAACTGCAGAATTCGCTAGGAGATGGGTTCCCTTCTGCAAGAAATTCTCCATAGAGCCTCGAGCTCCTGAGATGTACTTCTCTCTCAAGATTGATTATCTCAAGGACAAAGTCCAGCCTACCTTTGTTAAGGAGCGCCGCGCTATGAAGAGGGAATATGAAGAATTCAAGGTCCGGATCAATGCAATTGTTGCAAAGGCCGTGAAAGTTCCTCCAGAAGGGTGGATCATGCAAGATGGAACTCCATGGCCGGGGAACAACACCAAGGATCACCCAGGTATGATTCAGGTTTTTCTTGGACACAGTGGAGGTCTCGATGCAGAAGGAAATGAGCTGCCTCGCCTTGTCTATGTCTCTCGTGAGAAGAGGCCTGGTTTCCATCATCACAAGAAAGCTGGGGCCATGAATGCCCTGATTCGTGTCTCCGCAGTCCTCACAAATGCTCCTTTCATGCTTAACTTGGATTGTGATCATTATCTAAACAATAGCAAGGCTGTTCGAGAGGCAATGTGCTTCTTGATGGATCCACAAACTGGAAGGAAGGTTTGTTATGTCCAATTCCCTCAAAGATTTGATGGCATAGATAGGAACGATCGATATGCCAACAGAAACACAGTCTTCTTTGATATTAACATGAAGGGTCTAGATGGGATTCAGGGCCCGGTATATGTGGGTACTGGATGTGTTTTCAGAAGACAAGCCCTATATGGATATGATCCTCCAAAGGGTCCCAAGCGCCCGAAGATGGTAAGCTGTGATTGCTGCCCCTGTTTTGGACGCCGCAAAAAGCTTCAAAAGTATGCTAAACATGGTGAAAATGGAGAAGGATTGGAAGAAGACAAAGAAATGTTGATGTCTCAGATGAACTTTGAAAAGAAATTTGGACAGTCAGCTATTTTCGTAACCTCTACTTTAATGGAGCAAGGTGGTGTCCCTCCTTCCTCAAGTCCAGCAGCCCTGCTTAAGGAAGCCATTCATGTCATCAGCTGTGGCTATGAAGACAAAACTGACTGGGGATTGGAGTTGGGATGGATATATGGGTCCATTACAGAGGATATTCTAACAGGGTTCAAGATGCATTGCCGTGGTTGGAGGTCTATATACTGCATGCCAAAGAGACCAGCATTTAAGGGGTCAGCTCCCATTAACTTGTCTGATCGTCTCAACCAGGTGCTTCGGTGGGCTCTTGGCTCTGTTGAAATCTTCTTCAGTCGTCACAGCCCTGTCTGGTATGGCTACAAGGGAGGAAACCTCAAGTGGCTCGAGCGATTTGCATATGTCAACACAACAGTCTATCCCTTCACCTCCTTACCTCTCCTTGCCTATTGTACTCTTCCTGCCATCTGCTTGCTCACCGGAAAATTCATCATGCCGACGATAAGCACTTTCGCAAGTCTCTTCTTCATTGCTCTCTTTATCTCTATCTTCGCAACTGGCATTCTGGAACTGAGGTGGAGTGGAGTGAGCATTGAGGAATGGTGGAGAAATGAGCAGTTCTGGGTCATTGGTGGTGTGTCAGCTCATCTCTTTGCAGTGGTGCAGGGTCTTCTGAAGGTTTTGGCTGGAATAGATACCAACTTCACAGTCACATCAAAGGCAGTCGATGATGAGGAGTTCGGGGAGCTGTATACCTTCAAATGGACCACCCTCCTTATCCCTCCAACCACTCTCTTAATCATCAACCTTGTTGGAGTAGTGGCTGGGATCTCTGATGCCATAAACAATGGGTACCAATCATGGGGACCTCTATTCGGGAAGCTCTTCTTTGCCTTCTGGGTGATTGTTCATCTCTACCCATTCCTCAAAGGTCTCATGGGGCGGCAGAACCGGACACCTACCATTGTTGTCATATGGTCTGTGCTTCTGGCTTCTATCTTCTCCTTGCTTTGGGTCCGAATTGACCCATTCATATTAAAGACCAAGGGACCTGATGTTAAGCAATGTGGAATCAATTGCTGA 3114 0.4778 MEASAGLVAGSHNRNELVVIHGHEEPKPLRSLNGQVCEICGDEIGLTVDGEVFVACNECGFPVCRPCYEYERREGSQLCPQCKTRFKRLKGCARVEGDDDEEDIDDIEHEFNIDDEQNKNKLIAEAMLHGKMSYGRGPEDDDNAQFPPVITGVRSRPVSGEFPISSHAPGEQGLSSSLHKRVHPYPVSEPGSARWDEKKEGGWKERMDDWKMQQGNLGPDADDYNDPDMAMIEEARQPLSRKVPIASSKVNPYRMVIVARLLVLAFFLRYRILNPVHDALGLWLVSVICEIWFAFSWILDQFPKWFPIDRETYLDRLSFRYEREGEPNMLSPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYISDDGASILTFEALSETAEFARRWVPFCKKFSIEPRAPEMYFSLKIDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVAKAVKVPPEGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGLDAEGNELPRLVYVSREKRPGFHHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYLNNSKAVREAMCFLMDPQTGRKVCYVQFPQRFDGIDRNDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFRRQALYGYDPPKGPKRPKMVSCDCCPCFGRRKKLQKYAKHGENGEGLEEDKEMLMSQMNFEKKFGQSAIFVTSTLMEQGGVPPSSSPAALLKEAIHVISCGYEDKTDWGLELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEIFFSRHSPVWYGYKGGNLKWLERFAYVNTTVYPFTSLPLLAYCTLPAICLLTGKFIMPTISTFASLFFIALFISIFATGILELRWSGVSIEEWWRNEQFWVIGGVSAHLFAVVQGLLKVLAGIDTNFTVTSKAVDDEEFGELYTFKWTTLLIPPTTLLIINLVGVVAGISDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFILKTKGPDVKQCGINC* 1038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0762 1037 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 451 624 IPR029044 -
Vvi11g0762 1037 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 110 IPR013083 -
Vvi11g0762 1037 Pfam Cellulose synthase 333 1031 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vvi11g0762 1037 CDD mRING-HC-C4C4_CesA 35 85 - -
Vvi11g0762 1037 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 236 1004 - -
Vvi11g0762 1037 SUPERFAMILY RING/U-box 21 107 - -
Vvi11g0762 1037 SUPERFAMILY Nucleotide-diphospho-sugar transferases 347 858 IPR029044 -
Vvi11g0762 1037 FunFam Cellulose synthase 450 624 - -
Vvi11g0762 1037 Pfam Zinc-binding RING-finger 27 103 IPR027934 -
Vvi11g0762 1037 FunFam Cellulose synthase 19 110 - -
Vvi11g0762 1037 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0762 Vvi-Chr11 8370692 8375148 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0762 1 1037 Cell Wall Biosynthesis AT5G17420 84.933 0.0 1832
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0762 K10999 - vvi:100248512 2111.26