Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0751 ATGGAATTTAAATTTCGAGCGGTCGATGATCGGCCGCCGTATCTGTCCTCTTCGCCGAGCATGATCAACTACTTTACCGAACAAGCACTGAGAGCGGGGTATTCGAACAATGGCATCCTATTAAACGAGCTACTGAGTAATCCCTCTGACATGCGAGAAGCGATCCAGCGGGAACTCGAAAAAGAGCGGATCCGAGAAGAGATCATCGCACGGGAGATCGCGCGGAGACGATTACTCGAAGCTGAAGTTCGAAGAGAACTATTGATGGAGCAAGAATTGATGCTGACCAAAACTGAATTCAAATCGCCGGTTTCTTCGGCAATGCGGTTGGACCGGTTTCCGTTGTTTCACCAATCCGATAGTCGAGCACTTGAGGAACGACTGAGTAGATCTCTTGCGCAACGATTGGCACTGCAGGCTCGCCAGGAAATGCTCGCCGCCCTTGAGACTGGGACGTCTTTTCAGCGGGGTGTAGAAGCTGCAGGGCCTGAGGTTAAGCCTTTTCCAGAGGTTAACAAGGACAGGGTGATTTTACTGCCTAAACCTGGGCAAAACCTGTCTGGAGCAAAGCGGAAAGCTACAACACCACCCACAGTGGGTGTTAATGAGCTGTCTTCAGTTGGTTCAAAGAAGAAACTTAAAGAGGAATGGAGTTGCGCTCTGTGTCAGGTTACTGCCACAAGTGAGCGAGGTTTGAATGAGCACCTTCAGGGAAAGAAGCACAAGGCCAAGGAGGCAGGACTGGTAGCTCAAAGGGCAGGCAAGAACCCTGCTCCTTTGCAGAAGAAATTCAGAAAGGCTAGTAAGCTAGCGGAGATCACTGATGCTCCAGGTACAGGGCAGGTGGAAAAAATAGTTGGAGAAACACTTCAAACTGATATTGTTGGGGAGGCATCAACATCAATTCTCAAAAAGCACAATGCAGAAGATGGAGATAAGAAAAATGATGAATTACTGTTGCAGAAAAATGAGGTGGGAGAAGATATGACGAAAAATGTGGAGGCAACAAAGCCAAAAGGTCAGAAGCCAGTGGATCCCAAACTCAAGAAGAAGAAATTTAAATTTTGGTGCGAATTGTGTCATGTTGGGGCCTACTGCGAAGTAGTGATGTCTACCCATAAAAATGGAAAGAAGCATGTGGCCCGACTTCAGGAAATTAGTCAGCATGGTTTACCTGTTCCAGTCTCATCCACAACCATGACACCATCACCAGAGGTTATTCAAAATACTGAAACTGCAGAAGTGATAGCTAAAGAAGTAAATGCAGAGGTGATAGCTGTGGAAGCAGATGAGAAACCACTGGAAAATAATGAAGCAAATGAAGATGGATCAGGCCCATCCCCCAGTGTGAAATGA 1356 0.4698 MEFKFRAVDDRPPYLSSSPSMINYFTEQALRAGYSNNGILLNELLSNPSDMREAIQRELEKERIREEIIAREIARRRLLEAEVRRELLMEQELMLTKTEFKSPVSSAMRLDRFPLFHQSDSRALEERLSRSLAQRLALQARQEMLAALETGTSFQRGVEAAGPEVKPFPEVNKDRVILLPKPGQNLSGAKRKATTPPTVGVNELSSVGSKKKLKEEWSCALCQVTATSERGLNEHLQGKKHKAKEAGLVAQRAGKNPAPLQKKFRKASKLAEITDAPGTGQVEKIVGETLQTDIVGEASTSILKKHNAEDGDKKNDELLLQKNEVGEDMTKNVEATKPKGQKPVDPKLKKKKFKFWCELCHVGAYCEVVMSTHKNGKKHVARLQEISQHGLPVPVSSTTMTPSPEVIQNTETAEVIAKEVNAEVIAVEADEKPLENNEANEDGSGPSPSVK* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0751 451 Coils Coil 71 91 - -
Vvi11g0751 451 PANTHER OS06G0651300 PROTEIN-RELATED 1 395 - -
Vvi11g0751 451 MobiDBLite consensus disorder prediction 428 451 - -
Vvi11g0751 451 Gene3D Classic Zinc Finger 206 255 - -
Vvi11g0751 451 MobiDBLite consensus disorder prediction 181 203 - -
Vvi11g0751 451 MobiDBLite consensus disorder prediction 188 203 - -
Vvi11g0751 451 Gene3D Classic Zinc Finger 331 385 - -
Vvi11g0751 451 SUPERFAMILY beta-beta-alpha zinc fingers 206 250 IPR036236 -
Vvi11g0751 451 SMART ZnF_U1_5 352 386 IPR003604 GO:0003676|GO:0008270
Vvi11g0751 451 SMART ZnF_U1_5 214 248 IPR003604 GO:0003676|GO:0008270
Vvi11g0751 451 SUPERFAMILY beta-beta-alpha zinc fingers 349 384 IPR036236 -
Vvi11g0751 451 Pfam Zinc-finger of C2H2 type 355 379 - -
Vvi11g0751 451 Pfam Zinc-finger of C2H2 type 217 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0751 Vvi-Chr11 8193661 8208684 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0751 201 391 C2H2 Transcription Factor Family AT5G61190 25.000 7.75e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0751 - - vvi:100241709 762.296