Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0720 ATGCAGCCTTGTAGTAGAGAAATGCAAGCCATCAACTCTCTCCTAAACCCGTCTCAAATCTCTCTTCAAGACCTCCAAAATGGTCATCATCATCATCATCATCATCAACATCAGCAGCAGCAGCAGCATCAGCATCACCCCCAGATCCCTAACCCTTCTCAGATTCAGCTTCCCAATACCCACTTCGATTCCTCTTCCCATGACGACTTTTTGGAGCAAATGCTCTCTACTCTCCCTTCTTGGTCTGACCTCCCCGCAAACCCTAAATCTCCCTGGGAACTCAATGCTTCCAACCCTATCTCCATGCCTTCCAACAAGTCTAGGGATTTGTCCGACGATACCACGCCGTCTAATCCGGACAACGTTCAGTTCGCTTTCGACGAGTCCGCCATGTTGGCCTCCAAGCTCCGCCAGCACCAGATCAGCGGGAACTCGTCGGCGGCCAAGTCGGCGTTGATGCTTCAGCAGCAGTTGCTTTTGTCACGAGGCGTCGCCATGGGTAGGTCCCCGTCGAATGGGTCCGGCGCCGGTGAGTCCGGCCTTCTTCAACTGCCTTTGTCACTTAGCAACGGGGATTCTTGCCTCGTTGACCGATCACAAAACGACGTCGTTGATGGGTCCTCCTCCTTCAAATCCCCCAATCAGGGAGGAGACGGTTCAGTTCAAGCTCTCTACAATGGCTTCGCCGGAGCTCTTCACGGCTCCGGTCAAGCCTCCAACCAAGCTCAGAATTTCCACCATCCTCAGGGTGGATCAATGCAGGCACAGAACTACGGAGCTCCGGCGACTGTGATGAACCAGACACCGGCGACTGGCTCAGCGGGTGGTGCTCCAGCACAGCCCAGACAGAGGGTGAGGGCAAGAAGGGGTCAGGCAACTGACCCACACAGCATCGCTGAGAGATTACGTAGAGAGAGAATTGCAGAGAGAATGAAGGCACTGCAGGAACTGGTTCCCAATGCCAACAAGACGGACAAGGCTTCAATGCTGGATGAGATCATTGACTATGTCAAATTCCTGCAGCTCCAAGTGAAGGTACTCAGCATGAGCAGGTTGGGCGGTGCCGCAGCTGTTGCTCCCCTCGTTGCTGATATGTCCTCTGAGGGAGGTGGTGACTGTATACAGGCTAGTGGGACAAGCGGCCCTACAGGAGGAAGGGCAACGAACGGAACACAAACAACCACATCAAACGACAGCCTCACAGTGACGGAGCACCAGGTGGCCAAACTCATGGAGGAGGACATGGGTTCCGCCATGCAGTATCTTCAAGGCAAAGGCTTATGCCTTATGCCCATCTCCCTCGCCACTGCCATCTCCACCACTACCTGCCACTCCAGGAACCCCATGGTGGCTGCTGCCGCCGTCGCCGCCTCCAACATCAACAACGGCAGCCACACTCACCCACTCCTACCTAATTCCAACGCCGATGGCCCCTCCTCCCCCAGCATGTCCGTCCTGACCGTGCAGTCAGCCACCATGGGGAACGGCCTGGCCGACGCGCCCGTAAAAGACGCTGCCTCCGTTTCCAAGCCCTGA 1536 0.5586 MQPCSREMQAINSLLNPSQISLQDLQNGHHHHHHHQHQQQQQHQHHPQIPNPSQIQLPNTHFDSSSHDDFLEQMLSTLPSWSDLPANPKSPWELNASNPISMPSNKSRDLSDDTTPSNPDNVQFAFDESAMLASKLRQHQISGNSSAAKSALMLQQQLLLSRGVAMGRSPSNGSGAGESGLLQLPLSLSNGDSCLVDRSQNDVVDGSSSFKSPNQGGDGSVQALYNGFAGALHGSGQASNQAQNFHHPQGGSMQAQNYGAPATVMNQTPATGSAGGAPAQPRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGDCIQASGTSGPTGGRATNGTQTTTSNDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTTTCHSRNPMVAAAAVAASNINNGSHTHPLLPNSNADGPSSPSMSVLTVQSATMGNGLADAPVKDAASVSKP* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0720 511 MobiDBLite consensus disorder prediction 235 301 - -
Vvi11g0720 511 MobiDBLite consensus disorder prediction 235 274 - -
Vvi11g0720 511 MobiDBLite consensus disorder prediction 42 66 - -
Vvi11g0720 511 SMART finulus 297 346 IPR011598 GO:0046983
Vvi11g0720 511 MobiDBLite consensus disorder prediction 25 66 - -
Vvi11g0720 511 MobiDBLite consensus disorder prediction 464 490 - -
Vvi11g0720 511 MobiDBLite consensus disorder prediction 376 397 - -
Vvi11g0720 511 Gene3D - 286 348 IPR036638 GO:0046983
Vvi11g0720 511 MobiDBLite consensus disorder prediction 91 118 - -
Vvi11g0720 511 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 289 351 IPR036638 GO:0046983
Vvi11g0720 511 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 82 438 - -
Vvi11g0720 511 FunFam Transcription factor bHLH66 288 353 - -
Vvi11g0720 511 MobiDBLite consensus disorder prediction 89 118 - -
Vvi11g0720 511 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 291 340 IPR011598 GO:0046983
Vvi11g0720 511 Pfam Helix-loop-helix DNA-binding domain 296 341 IPR011598 GO:0046983
Vvi11g0720 511 MobiDBLite consensus disorder prediction 287 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0720 Vvi-Chr11 7656707 7659486 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0720 270 510 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 61.868 2.30e-92 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi11g0720 HLH 2.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0720 - - vvi:100243222 916.376