Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0717 ATGGAAGAGGAAATATTAAGTGTAATATCAAATGGAGGAACAAATGTGATTGTAGAAGCTTCAGATTCGAACAGCAGCAGTCTCCCATTTCATGGAAGCAAGCGCACAAAACAGGGTATTAGTGTCTCTTCTGGAAGGTTCAAAGGGGTTGTACCTCAGCAAAATGGGCACTGGGGTGCACAAATATATGCCAACCACCAGCGAATTTGGCTTGGTACATATAAATCAGAAACTGAAGCAGCAATGGCTTATGATAGTGCAGCCATCAAGCTCCGAAGTGGGGACAATCACAGGAATTTTCCATGGACTAACCTCACCATTCAAGAGCCCAACTTCCAAAGTTTTTTCAGTACTGAAACGGTAGTAAACATGATTAAGGATGGCTCCTACCCATCCAAGTTTGCTGAATTTCTGAAGACTGAATCACAGAGAGGAGAAACAGAAGTACTCAGTCTTGACCAAGTGGGTGTGCACCGGAATGGAAGGTTTATGTGTAGGCTTCTTTTCCAGAAGGAGCTTACCCCAAGTGATGTGGGTAAGCTCAACAGGCTTGTGATCCCAAAGAAATATGCTACTAAGCACTTTCCTCCTATTTCTGAAAGCGCGGAAGAAAATGAGGTTGGTGGTGCAGCAGCCGACATGCAGCTGGTTTTTTATGACAGGTTAATGAGGCTATGGAAATTCCGGTACTGCTATTGGAGAAGTAGCCAGAGTTATGTCTTCACAAGGGGTTGGAATCGGTTTGTAAAGGACAAAGAACTAAATGAAAATGACATTGTTACTTTCTACCTGTGTGAGTATGGACAAGGGACAAAAGAGGGCCGAACATTCTGCATGATTGATGTAGCTTATGACAGGAGCACTGATGGCCGGGATGCAAACAATGGTAGCTTTGTTGAAGGGCCTAATCGATATGTTGGGCTGCAAATCGAGTTGCAACAAGATCTGAAGCAAAATATCGGGTATAACAAGCATGAGAGGAAATCCCAAGAAGAGGAAGAGTCTGTGGGAACTGAACCAGCACTTGAGGGGCAGAAAAAAGGTCTTAGACTTTTCGGTGTACAAATTGGCTGA 1074 0.4385 MEEEILSVISNGGTNVIVEASDSNSSSLPFHGSKRTKQGISVSSGRFKGVVPQQNGHWGAQIYANHQRIWLGTYKSETEAAMAYDSAAIKLRSGDNHRNFPWTNLTIQEPNFQSFFSTETVVNMIKDGSYPSKFAEFLKTESQRGETEVLSLDQVGVHRNGRFMCRLLFQKELTPSDVGKLNRLVIPKKYATKHFPPISESAEENEVGGAAADMQLVFYDRLMRLWKFRYCYWRSSQSYVFTRGWNRFVKDKELNENDIVTFYLCEYGQGTKEGRTFCMIDVAYDRSTDGRDANNGSFVEGPNRYVGLQIELQQDLKQNIGYNKHERKSQEEEESVGTEPALEGQKKGLRLFGVQIG* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0717 357 SUPERFAMILY DNA-binding pseudobarrel domain 167 268 IPR015300 -
Vvi11g0717 357 Gene3D - 165 289 IPR015300 -
Vvi11g0717 357 Pfam AP2 domain 47 92 IPR001471 GO:0003700|GO:0006355
Vvi11g0717 357 SMART rav1_2 46 107 IPR001471 GO:0003700|GO:0006355
Vvi11g0717 357 ProSiteProfiles B3 DNA-binding domain profile. 169 285 IPR003340 GO:0003677
Vvi11g0717 357 CDD B3_DNA 168 264 IPR003340 GO:0003677
Vvi11g0717 357 SMART B3_2 169 273 IPR003340 GO:0003677
Vvi11g0717 357 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 43 356 IPR044800 GO:0003700
Vvi11g0717 357 Pfam B3 DNA binding domain 169 266 IPR003340 GO:0003677
Vvi11g0717 357 SUPERFAMILY DNA-binding domain 46 102 IPR016177 GO:0003677
Vvi11g0717 357 FunFam AP2 domain-containing protein RAP2.8 45 102 - -
Vvi11g0717 357 ProSiteProfiles AP2/ERF domain profile. 46 101 IPR001471 GO:0003700|GO:0006355
Vvi11g0717 357 MobiDBLite consensus disorder prediction 324 344 - -
Vvi11g0717 357 CDD AP2 46 103 IPR001471 GO:0003700|GO:0006355
Vvi11g0717 357 Gene3D AP2/ERF domain 45 102 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0717 Vvi-Chr11 7603608 7604681 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0717 29 284 RAV Transcription Factor Family AT1G51120 57.249 4.45e-105 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Vvi11g0717 B3 2e-25 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0717 K09287 - vvi:100250084 730.324