Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0705 ATGACGGTGGAGGAAAGAAAAGGTGGTCTGGCTGGCGAAGATGGAGTTAAGGACCCGTTTCCGGTGGGTATGCGCGTGCTTGCCGTCGACGACGATCCGACTTGTCTTATGCTCTTGGATGGCCTGCTTCGTCGATGCCAGTATCAGGTTACAACAACCAACCAGGCGATCACAGCATTGAAGATGCTGAGGGAAAACAAGAACAACTTTGACCTGGTTATCAGTGATGTTAGTATGCCAGACATGGATGGTTTTAAACTCCTCGAGCTTGTGGGGCTTGAAATGGACCTACCTGTCATCATGTTGTCCTCGCATAGTGACCCCAAACTAGTAATGAGGGGGATTACTCATGGTGCTTGTGACTATTTGTTGAAACCGGTTCGAATTGAGGAGCTCAAGAACATATGGCAACATGTAATCAGGAGAAAGAAGATCGACTCCAAGGACCAAAACAAGTCTGCAGATCAGGACAACGCCCTACATGCAGATGGAGAAGGTGGAGAAGGCCCCCCATCATCCAGCAATGCAGATCAGAATGGGAAACTAAATAGAAAGCGGAAGGACCAAAATGAGGATGAGGAGGAAGAGGGTGAAGAGAACGGAGAAGAGAATGAGGATCCATCATCCCAAAAGAAACCTAGGGTTGTTTGGTCCGTGGAACTGCACAGGAAGTTTGTTGCAGCTGTTAATCAATTGGGCATTGAAAAGGCTGTTCCTAAGAGAATTCTTGACCTGATGAATGTTGAAGGACTTACAAGGGAAAATGTGGCTAGCCATTTGCAGAAATATAGGCTTTATCTGAAAAGGATCAGTTGTGTGGCAACCCAGCAAGCTAACATGGTTGCTGCATTTGGAGCTAAAGATTCCTCTTATATGCGCATGGGTTCGCTGGATGGATTTGGTGATTTTCGTGGCTTGGCTGGACCAGGAAGGCTTAACAGCACTGCTATGTCATCATATCCACCAAGTGGGATGCTTGGTAGGTTGAATTCCCCTGCTGGTTTGAGCCTACGTGGACTTACTTCTTCTGGACTGATTCAAACAGGCCATGCCCAAAACTCAAGCAACTCTGTTAATACTCATGGGAAGCTTCAACCGGTTGTTTTACCAACAAACCAAAGTGCAAGTTTGTTTCAAGGGATTCCAACGTCATTGGAGCTAGACCAGTTGCAACAGAGAAAATGCATTAGTACCCAGAGAGGAGAGTTCAGTTCTGTTGATAACACAACAGTTTTCACAACTGCCAATGGCTTCCCTGATAGCAGAATGACTGTTCATAGCTCAAGCAACTCTTTATCCAATGCCCCAAGCAACCCTTTGATGTTACAATCTAATCCACAACAAACACTATGTAGGGGAGGGTTAGCAAATCAATCTTCCCTGAAAGCGGTTACTTTGAATCCAGAACCTTATACAATGGGCGTCAGTGGTTCATCTAATTTTCTGGATCATGGTAGATGTAATGAAAACTGGCAGAGTGCACTTCAATTGTCGAAGTTTCCATCAAATTCTTTGCCATTGAGTGAACCACTCAATTGCGATCCGTTGACTACTAATAACCTTAGAGAGCATATTTCTTCAACTGGCTCTCATATTCGACGTAGCCCAATTGATTTTTCTGCCACTAGTGTACTTGCAGGACCTCTTGAGGACTCAAGAGGAGAAATGCCATGCCAATCAGGGTTGATTGGTAATGTGGTTCAGAATATTAACTATGCACCAAAGCAAAGGTGGGAAGAACAGAAACAAGATTACACCCAGAGCTCAAATCATGTTTTTGGCACATTAAACTCTATCATTCCTGCCAACAATGTTATGGGTCCCTTAAACCACAGTTTGGACCAAAATAACGCAGCATGCAATAGAAAGATGGATATGCCTTTGATCAGTCAATCAAATGCTAGCTCTTCATCTCTTGTGCAGCACAGCGAGGTTGAGAAATCAGCTATGGACACAAAGATGGTGTCAAATGAAGACTACCTCTTGGAACAAACAAAGTCACAGGATGGCTTGATTCATAATAGTTACGAGTCCTTGGATGATCTAATGAGTGCAATGATAAAACGGGAACATGATGAGACTATGTTAATGAATGGAGAGTTCGGATTTGATGCATACTCCCTTGGACCATGTATATGA 2139 0.4413 MTVEERKGGLAGEDGVKDPFPVGMRVLAVDDDPTCLMLLDGLLRRCQYQVTTTNQAITALKMLRENKNNFDLVISDVSMPDMDGFKLLELVGLEMDLPVIMLSSHSDPKLVMRGITHGACDYLLKPVRIEELKNIWQHVIRRKKIDSKDQNKSADQDNALHADGEGGEGPPSSSNADQNGKLNRKRKDQNEDEEEEGEENGEENEDPSSQKKPRVVWSVELHRKFVAAVNQLGIEKAVPKRILDLMNVEGLTRENVASHLQKYRLYLKRISCVATQQANMVAAFGAKDSSYMRMGSLDGFGDFRGLAGPGRLNSTAMSSYPPSGMLGRLNSPAGLSLRGLTSSGLIQTGHAQNSSNSVNTHGKLQPVVLPTNQSASLFQGIPTSLELDQLQQRKCISTQRGEFSSVDNTTVFTTANGFPDSRMTVHSSSNSLSNAPSNPLMLQSNPQQTLCRGGLANQSSLKAVTLNPEPYTMGVSGSSNFLDHGRCNENWQSALQLSKFPSNSLPLSEPLNCDPLTTNNLREHISSTGSHIRRSPIDFSATSVLAGPLEDSRGEMPCQSGLIGNVVQNINYAPKQRWEEQKQDYTQSSNHVFGTLNSIIPANNVMGPLNHSLDQNNAACNRKMDMPLISQSNASSSSLVQHSEVEKSAMDTKMVSNEDYLLEQTKSQDGLIHNSYESLDDLMSAMIKREHDETMLMNGEFGFDAYSLGPCI* 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0705 712 Gene3D - 208 271 - -
Vvi11g0705 712 FunFam Two-component response regulator 208 271 - -
Vvi11g0705 712 MobiDBLite consensus disorder prediction 146 162 - -
Vvi11g0705 712 SUPERFAMILY Homeodomain-like 210 269 IPR009057 -
Vvi11g0705 712 MobiDBLite consensus disorder prediction 146 212 - -
Vvi11g0705 712 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
Vvi11g0705 712 Gene3D - 23 162 - -
Vvi11g0705 712 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Vvi11g0705 712 SUPERFAMILY CheY-like 23 147 IPR011006 -
Vvi11g0705 712 CDD REC_typeB_ARR-like 26 140 - -
Vvi11g0705 712 NCBIfam myb-like DNA-binding domain, SHAQKYF class 212 265 IPR006447 GO:0003677
Vvi11g0705 712 PIRSF RR_ARR_type-B 1 711 IPR017053 GO:0003677|GO:0003700|GO:0009736
Vvi11g0705 712 Pfam Myb-like DNA-binding domain 214 264 IPR001005 -
Vvi11g0705 712 SMART REC_2 24 136 IPR001789 GO:0000160
Vvi11g0705 712 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 209 268 IPR017930 -
Vvi11g0705 712 PANTHER TWO-COMPONENT RESPONSE REGULATOR 24 394 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0705 Vvi-Chr11 7391806 7399354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0705 1 449 Response Regulator Gene Family AT2G25180 54.585 3.36e-140 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vvi11g0705 Response_reg 1.2e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0705 K14491 - vvi:100259369 1375.53