Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0688 ATGGCTGTTCATTATGTGCCAACTCTCTACTCAGTGAGCTACCACATTGAGGCAATACAGAGGAACTTGGATTGGGCACATATTCCAGCATATGACTATTATTTGCCTTCAAGGGTGAACTTTACACACGCCCATGCTGCTTTGTATGATCCATTGAGCAATGTTAGCACTGATTTTGGTATTAGGGAATGGATCAGTAAAGGGTTCCCTGCTAGTAAGCTGGTTTTGGGGTTGCCTTACCATGGATATGCATGGACACTTGTGAACCCTAACCACAATGGCATTGGCGCACCCACTTCAGGTATAGCCATGACAGCAGATGGATCCATGAGCTATAAATACATCAAGTGGTTCCTTCGAAGTTATGGGGCTACTTCAATGTACAATGCTACTTATGTAGTGAATTACGTCACTATTGGAACAACTTGGATTGGTTTTGATGATGTGCAGGCTATCAGAGCTAAAATTTCTTATGCCAAGGAGAAGAAGCTACTTGGTTACAATGTGTTCCAGGTTAGCAACGACGACAATTGGGCGCTTTCTCAGGCAGCTCAAGATGATGACAAAGTTCATCACAAGAAGCAGGAATTATTGATAAAAATTCTGGTTCCAATTGCTGTACTTATTCTTGTAGCAGGCTCCATAATGTGTTGTTACTCACGAAGCAGAGTACTCAAAGCAATAGGGACCAGGAATTTAGGCAAAATATCACTACATGAAGTAGGAAGCAAATCATCAGGTGTTGAAAATTTTAACAGTAATGCTCCTAATCTGCGAGTGTTCAGTTTTGCTGAGATCAAAGAGGCTACAAATAACTTTTCCTTTGAAAATAAGCTTGGAGAGGGTGGATTTGGGCCTGTTTACAAGGGTAAATCACAGAAGGGAGAGGAAATGGCAGTGAAGAGGCTTTCGAAAACTTCTAATCAGGGAGCAGAGGAGTTCAAAAATGAGGTTACACTTACAGCCAAACTGCAACATGTAAATCTAGTTAGGCTTCAGGGATTTTGCACGGAAGGAGAAGAAAAGATGTTGATCTATGAGTACATGCCCAACAAAAGCCTGGATTTCTATCTGTTTGGTCTGCAACCTTTTCTGCTCCAACTATAG 1107 0.4164 MAVHYVPTLYSVSYHIEAIQRNLDWAHIPAYDYYLPSRVNFTHAHAALYDPLSNVSTDFGIREWISKGFPASKLVLGLPYHGYAWTLVNPNHNGIGAPTSGIAMTADGSMSYKYIKWFLRSYGATSMYNATYVVNYVTIGTTWIGFDDVQAIRAKISYAKEKKLLGYNVFQVSNDDNWALSQAAQDDDKVHHKKQELLIKILVPIAVLILVAGSIMCCYSRSRVLKAIGTRNLGKISLHEVGSKSSGVENFNSNAPNLRVFSFAEIKEATNNFSFENKLGEGGFGPVYKGKSQKGEEMAVKRLSKTSNQGAEEFKNEVTLTAKLQHVNLVRLQGFCTEGEEKMLIYEYMPNKSLDFYLFGLQPFLLQL* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0688 368 Gene3D - 80 146 IPR029070 -
Vvi11g0688 368 ProSiteProfiles Protein kinase domain profile. 273 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0688 368 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 173 360 - -
Vvi11g0688 368 SUPERFAMILY Protein kinase-like (PK-like) 250 362 IPR011009 -
Vvi11g0688 368 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 1 191 IPR001223 GO:0005975
Vvi11g0688 368 SUPERFAMILY (Trans)glycosidases 1 186 IPR017853 -
Vvi11g0688 368 Gene3D Phosphorylase Kinase; domain 1 248 348 - -
Vvi11g0688 368 Pfam Glycosyl hydrolases family 18 1 175 IPR001223 GO:0005975
Vvi11g0688 368 SMART 2g34 1 175 IPR011583 GO:0008061
Vvi11g0688 368 FunFam Uncharacterized protein 248 348 - -
Vvi11g0688 368 SUPERFAMILY Chitinase insertion domain 82 146 IPR029070 -
Vvi11g0688 368 FunFam Chitotriosidase-1 80 146 - -
Vvi11g0688 368 Pfam Protein tyrosine and serine/threonine kinase 274 358 IPR001245 GO:0004672|GO:0006468
Vvi11g0688 368 Gene3D Glycosidases 1 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0688 Vvi-Chr11 7198398 7200402 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0688 2 185 Glycoside Hydrolase AT4G19810 48.387 2.21e-49 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi11g0688 Glyco_hydro_18 3e-32 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0688 - - vvi:100265878 731.095