Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0682 ATGAAAAAATTATTTTCTTTTCCAAACTTTTTTTTACGTCGGCGAGCTCGGAAGATCTCAAAAATGCCGTCGCACAAGACCTTCATGATCAAGAAGAAGCTGGCGAAGAAGATGAGGCAGAACAGGCCGATTCCTCACTGGATCCGTATGCGTACGGACAACACCATCAGGTACAACGCGAAGCGCAGGCACTGGCGCCGCACAAAGCTAGGATGCAAGAGATGTTGGAAAAGGTAG 237 0.4768 MKKLFSFPNFFLRRRARKISKMPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGCKRCWKR* 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0682 78 Hamap 50S ribosomal protein L39e [rpl39e]. 22 73 IPR000077 GO:0003735|GO:0005840|GO:0006412
Vvi11g0682 78 Pfam Ribosomal L39 protein 30 70 IPR000077 GO:0003735|GO:0005840|GO:0006412
Vvi11g0682 78 Gene3D Ribosomal protein L39e 22 72 IPR023626 -
Vvi11g0682 78 ProSitePatterns Ribosomal protein L39e signature. 51 67 IPR020083 GO:0003735|GO:0005840|GO:0006412
Vvi11g0682 78 FunFam 60S ribosomal protein-like L39 22 72 - -
Vvi11g0682 78 PANTHER RIBOSOMAL PROTEIN L39E 14 74 - -
Vvi11g0682 78 SUPERFAMILY Ribosomal protein L39e 24 71 IPR023626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0682 Vvi-Chr11 7127716 7130572 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0682 22 71 Cytoplasmic Ribosomal Protein Gene Family AT4G31985 94.000 4.59e-30 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0682 K02924 - cit:102617787 110.923