Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0669 ATGGAGATTTTCAGGAGCTTCTGTGTGAGTGTTTTGGGAGCTCTGCTGGTTATTGAAGCTGTTTTGGCTGCTGATCTTTTCTCTGATGCGCTTCTTAGCCTGAAGTCCGAGTTTGTTGATGATTCTAACAGCTTGGCTGATTGGTTTGTGCCTCCTGGAGTAGAGGAGTATGACAAGGTCTATGCTTGTTCTTGGTTCGAAGTCACATGTAACAAGAACTCCTCTCTGGTCATTGGTCTGGACCTGTCTTCCAAGAACCTTGGTGGAATAATTTCTGGGAAGCAATTCAGTGTCTTTACTGAGCTGGTTGATCTCAACCTCAGCTACAATTCTTTCTCTGAGCAGCTCCCTGTGGAAATCTTCAATCTCACCAATCTGAGAAGCTTGGATATCAGCAGAAACAATTTTTCAGGTCACTTTCCTGGTGGAGTTTCCAGGCTTGAGCACCTTGTTGTGCTTGACGCCTTCAGCAACAGCTTTTCGGGCCCACTGCCAACTGAAGTTTCTCAGCTTGAATACCTAAAAGTTCTCAATTTAGCTGGGAGTTATTTCAAGGGACCAATCCCATCAGAATATGGTTCTTTCAAGAGCCTTGAGTTCATTCATCTGGCAGGAAACCTTCTCAGTGGGAGCATACCGCCAGAACTGGGTAAACTGAGTACAGTGACCCATATGGAGATTGGCTACAATTCTTACCAGGGAAGTATTCCATGGCAATTGGGTAACATGACTGAGATTCAGTATCTTGATATTGCTGGGGCTGATCTCTCAGGCTCAATACCCAAGCAACTCAGCAATCTTACTAAGCTTCAATCACTTTTTCTCTTCAGAAACCAACTCACTGGATTGATTCCATCGGAGTTTAGCAGAATCGTGACGCTGACAGACTTGGATCTTTCTGATAACCAGCTTTCTGGGTCTATTCCAGAGAGCTTTTCAGAGCTGAAGAATCTTAGACTGCTCAGTCTAATGTACAATGACATGAGTGGCACTGTCCCTGAAAGCATTGCGGAACTCCCATTACTGGATACCCTTCTCATATGGAACAATTTCTTCTCTGGGTCACTTCCACAGAGCCTGGGCACGAATTCGAAACTCAAGTGGGTGGATGTTTCTACAAACAATTTCAATGGTCCCATTCCTCCAGAGATCTGCACAGGGGGAGTGCTTTTCAAGTTGATTCTGTTTTCAAATAATTTTACGGGCGGTCTTTCTCCATCTCTCTCCAATTGCTCTTCTCTTGTTCGTCTCCGACTTGAAAATAATTCCTTCTCAGGTGAGATCCCTTTAAGATTCAGCCATCTTCCTGAAATCACATATGTCGACCTGTCTGGAAATGGATTTACTGGTGGAATTCCCACAGACATATCCCAAGCTTCCAATCTTCAGTACTTTAATGTCTCTAAAAATTCAGAGCTAGGAGGGATGCTCCCTGCAAAAATTTGGTCTCTGCCGCTTCTTCAGAACTTCTCAGCGAGCTCTTGTAAAATCTCTGGTCATATTCCTGCTTTCCAAGTCTGCAAAAATATTACAGTAATTGAAGTGAGCATGAACAACTTGTCAGGAATTATCCCAGAAAGTATTTCCAGTTGTCAGGCCCTTGAGATGGTGAATTTAGCCAACAATAATTTTACAGGTCATATACCTGAGCAGCTTGCAAGTCTTCATGAACTTGCTGTGGTAGACCTATCCCACAATAATTTGACTGGTCCCATTCCTGAAAAGCTCAGCAATTTATCCAGCTTACTACTCATCAACGTGTCATTCAACGATATCTCTGGTTCAATTCCTTCAGAAAAGATTTTCAGAGTGATGGGTAGCAGTGCTTTTGTTGGAAATTCAAAGCTATGTGGAGAACCTTTGAAACCATGTGCTGATTCTGAGGGAATTCAGCATGGATTCAAACTGGGGAGCAAAAGCAAAGACAAGCTTAAATGGGTTCTTCTACTCTGTGCAGGGGTGCTTTTATTTATCTTGGTTTCAGTTCTGGGAATATTTTATTTCAGGAGAGGAAGTAAAGGACGATGGGAAATGGTTTCTTTTAGCGGGCTTCCTCGATTCACAGCAAATGATGTTTTGAGGAGTTTTAGTTCTACAGAATCCATGGAGACAACACCACCATTATCCTCTTCAGTTTGCAAAGCAGTTCTGCCCACAGGAATAACAGTTTCAGTGAAGAAGATTGAATGGGAAGCAAAGAGAATGAAGGTTATGTCAGAATTCATAACCCGAATAGGCAATGCAAGGCACAAGAATCTGATAAGACTGCTGGGTTTCTGCTATAACAAGCATGTGGCATATCTCTTATATGATTACTTGCCTAATGGAAATCTTGCTGAGAAGATCAGAATGAAAAGGGATTGGACAGCCAAGTACAAAATTGTAATTGGAATTGCAAGGGGACTTCACTATCTTCATCATGAATGCTACCCTGCAATACCCCATGGTGATTTGAAGTCGAGTGACATATTGTTTGATGAAAATATGGAACCCCATCTGGCAGAATTTGGATTCAAACTTCTGGCAGAATTGAACAAAGCTTCACTTCCATCAACCATTTCTAGGACAGAAACAGGTGAATTCAATCCTGCAATAAAAGAGGAGCTCTACACCGACATTTACAGCTTTGGAGAGGTGATTATGGAAACTATAACAAATGGTAGGCTAACAAATGCAGGAGGAAGCATACAGAGCAAGCCAAGGGAGGCTCTTTTAAGAGAGATTTACAATGAAAATGAAGTGGGGTCTGCAGATTCCATGCAGGAGGAGATAAAATTGGTTTTTGAAGTTGCTTTGTTGTGCACTAGAAGTAGACCATCTGACAGACCTTCCATGGAAGATGTATTAAATCTTTTATCGGGTTTGAAGTCACAAAGATTTATCGGGTTTGAAGTCACAAAGAAACAGGAGAACTTTTGA 2919 0.4214 MEIFRSFCVSVLGALLVIEAVLAADLFSDALLSLKSEFVDDSNSLADWFVPPGVEEYDKVYACSWFEVTCNKNSSLVIGLDLSSKNLGGIISGKQFSVFTELVDLNLSYNSFSEQLPVEIFNLTNLRSLDISRNNFSGHFPGGVSRLEHLVVLDAFSNSFSGPLPTEVSQLEYLKVLNLAGSYFKGPIPSEYGSFKSLEFIHLAGNLLSGSIPPELGKLSTVTHMEIGYNSYQGSIPWQLGNMTEIQYLDIAGADLSGSIPKQLSNLTKLQSLFLFRNQLTGLIPSEFSRIVTLTDLDLSDNQLSGSIPESFSELKNLRLLSLMYNDMSGTVPESIAELPLLDTLLIWNNFFSGSLPQSLGTNSKLKWVDVSTNNFNGPIPPEICTGGVLFKLILFSNNFTGGLSPSLSNCSSLVRLRLENNSFSGEIPLRFSHLPEITYVDLSGNGFTGGIPTDISQASNLQYFNVSKNSELGGMLPAKIWSLPLLQNFSASSCKISGHIPAFQVCKNITVIEVSMNNLSGIIPESISSCQALEMVNLANNNFTGHIPEQLASLHELAVVDLSHNNLTGPIPEKLSNLSSLLLINVSFNDISGSIPSEKIFRVMGSSAFVGNSKLCGEPLKPCADSEGIQHGFKLGSKSKDKLKWVLLLCAGVLLFILVSVLGIFYFRRGSKGRWEMVSFSGLPRFTANDVLRSFSSTESMETTPPLSSSVCKAVLPTGITVSVKKIEWEAKRMKVMSEFITRIGNARHKNLIRLLGFCYNKHVAYLLYDYLPNGNLAEKIRMKRDWTAKYKIVIGIARGLHYLHHECYPAIPHGDLKSSDILFDENMEPHLAEFGFKLLAELNKASLPSTISRTETGEFNPAIKEELYTDIYSFGEVIMETITNGRLTNAGGSIQSKPREALLREIYNENEVGSADSMQEEIKLVFEVALLCTRSRPSDRPSMEDVLNLLSGLKSQRFIGFEVTKKQENF* 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0669 972 Gene3D Ribonuclease Inhibitor 286 389 IPR032675 -
Vvi11g0669 972 Gene3D Phosphorylase Kinase; domain 1 691 772 - -
Vvi11g0669 972 FunFam Leucine-rich repeat receptor-like protein kinase 25 189 - -
Vvi11g0669 972 Pfam Leucine rich repeat N-terminal domain 29 71 IPR013210 -
Vvi11g0669 972 SUPERFAMILY Protein kinase-like (PK-like) 710 952 IPR011009 -
Vvi11g0669 972 Pfam Leucine rich repeat 269 327 IPR001611 GO:0005515
Vvi11g0669 972 Gene3D Ribonuclease Inhibitor 390 628 IPR032675 -
Vvi11g0669 972 FunFam Leucine-rich repeat receptor-like protein kinase TDR 190 289 - -
Vvi11g0669 972 SMART LRR_typ_2 99 123 IPR003591 -
Vvi11g0669 972 SMART LRR_typ_2 291 314 IPR003591 -
Vvi11g0669 972 SMART LRR_typ_2 195 219 IPR003591 -
Vvi11g0669 972 SMART LRR_typ_2 555 579 IPR003591 -
Vvi11g0669 972 SMART LRR_typ_2 267 290 IPR003591 -
Vvi11g0669 972 PANTHER UNNAMED PRODUCT 171 889 - -
Vvi11g0669 972 Gene3D Ribonuclease Inhibitor 189 285 IPR032675 -
Vvi11g0669 972 FunFam Leucine-rich repeat receptor-like protein kinase TDR 773 960 - -
Vvi11g0669 972 Gene3D Ribonuclease Inhibitor 28 188 IPR032675 -
Vvi11g0669 972 SUPERFAMILY L domain-like 308 617 - -
Vvi11g0669 972 FunFam Leucine-rich repeat receptor-like protein kinase TDR 687 772 - -
Vvi11g0669 972 FunFam Leucine-rich repeat receptor-like protein kinase TDR 386 628 - -
Vvi11g0669 972 SUPERFAMILY RNI-like 79 401 - -
Vvi11g0669 972 Gene3D Transferase(Phosphotransferase) domain 1 773 969 - -
Vvi11g0669 972 ProSiteProfiles Protein kinase domain profile. 657 961 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0669 972 PRINTS Leucine-rich repeat signature 555 568 - -
Vvi11g0669 972 PRINTS Leucine-rich repeat signature 294 307 - -
Vvi11g0669 972 Pfam Protein tyrosine and serine/threonine kinase 719 951 IPR001245 GO:0004672|GO:0006468
Vvi11g0669 972 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 290 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0669 Vvi-Chr11 6913184 6916479 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0669 16 953 Receptor kinase-like Gene Family AT5G51350 57.339 0.0 1038
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi11g0669 PK_Tyr_Ser-Thr 8.5e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0669 - - vvi:100265415 1906.72