Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0654 ATGGCGTTTCACAACCAGCTCTCCCACGATATGGCTCTCCAGCATTTCACGGACTCGCACTTGACTGAGAACACGGCCGTTTTGCGGGGAATATTGCCGGAGCAGCTAGGCCAGTCGTCTTCCGATGGTGCCGGAAAACCGCCTAGTCACCAGCAGCTGGGAGGAGGAGGCGGCGGCGGCGGCCCGACGTGGCTCAACAACGCAATTCTGCGGCAGCAGAGTCAATACGCCGATGGGAGCTTCCTCCACTTGCAGACGAATTCGGATTCGACGTCCTCTCCGGCGACGGCCACGACGACGACCAACCAGTGGCTCTCGCGATCGATGAGCAACGTGGGCGCCCAAAACGACGACGTTCCGGTGTCTAGCGGGTCCGTGATTGCTGCTATATCGGCGGATTTGAACGGTAATCAGGAGAAGAGAAACGGAGGGAACAATCAGAACCGGGGCGATAACAATGGTGAGGACATGCTGGATTGTGATTCTGGAGGGAATTGGGAAAATGCGAGGTACAAAGCCGATATCTTGGCCCATCCTTTGTATGAACAGTTGCTTTCCGCTCACGTTTCATGCCTCCGAATCGCGACGCCTGTCGACCAGTTGCCGAGGATCGATGCGCAGCTGGCGCAATCTCAGGGCGTTGTAACCAAGTATTCGGTCCTTGCAAATCAGCCTTTGGATGATAAGGAGCTCGATCAGTTCATGACACATTATGTTCTATTGCTGTGTTCATTTAAAGAACAATTGCAACAACACGTCCGTGTTCATGCTATGGAAGCCGTAATGGCTTGTTGGGAGCTTGAGCAATCTCTACAAAGTTTAACAGGTGTATCACCAGGTGAAGGCACTGGTGCAACAATGTCTGATGATGAAGATGACCAGGCAGATAGTGAGATCAACTTGTTTGATGGAAGTCTGGATGGGCCAGACAGCATGGGGTTTGGCCCTCTTGTTCCAACTGAAACCGAAAGGTCCTTGATGGAGCGTGTCAGGCAAGAGTTGAAGCATGAGCTCAAACAGGGATACAAGGAAAAGATTGTGGACATTAGAGAGGAAATTCTTCGTAAGAGAAGAGCTGGAAAACTACCTGGTGACACTACCTCCCTCTTGAAAGCCTGGTGGCAATCACATTCCAAGTGGCCTTATCCAACAGAGGAAGACAAAGCACGACTGGTGCAGGAAACAGGCTTGCATTTAAAGCAGATCAATAACTGGTTCATCAACCAAAGGAAACGGAATTGGCACAGCAATCCTTCATCTTCTGCAGTTTTGAAGACCAAGCGAAAGAGTAATGCAGGTGAAATCAACAATGATCACTTTTTGTAA 1326 0.5068 MAFHNQLSHDMALQHFTDSHLTENTAVLRGILPEQLGQSSSDGAGKPPSHQQLGGGGGGGGPTWLNNAILRQQSQYADGSFLHLQTNSDSTSSPATATTTTNQWLSRSMSNVGAQNDDVPVSSGSVIAAISADLNGNQEKRNGGNNQNRGDNNGEDMLDCDSGGNWENARYKADILAHPLYEQLLSAHVSCLRIATPVDQLPRIDAQLAQSQGVVTKYSVLANQPLDDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGVSPGEGTGATMSDDEDDQADSEINLFDGSLDGPDSMGFGPLVPTETERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLHLKQINNWFINQRKRNWHSNPSSSAVLKTKRKSNAGEINNDHFL* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0654 441 Pfam Homeobox KN domain 373 412 IPR008422 GO:0003677|GO:0006355
Vvi11g0654 441 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 142 418 - -
Vvi11g0654 441 SMART KNOX1_2 169 213 IPR005540 GO:0003677|GO:0005634
Vvi11g0654 441 FunFam homeobox protein knotted-1-like 3 isoform X1 354 415 - -
Vvi11g0654 441 SMART ELK_2 333 354 IPR005539 GO:0003677
Vvi11g0654 441 SUPERFAMILY Homeodomain-like 355 418 IPR009057 -
Vvi11g0654 441 MobiDBLite consensus disorder prediction 133 159 - -
Vvi11g0654 441 ProSiteProfiles 'Homeobox' domain profile. 353 416 IPR001356 GO:0003677
Vvi11g0654 441 Pfam KNOX2 domain 225 275 IPR005541 GO:0003677|GO:0005634
Vvi11g0654 441 CDD homeodomain 356 417 IPR001356 GO:0003677
Vvi11g0654 441 MobiDBLite consensus disorder prediction 36 65 - -
Vvi11g0654 441 Pfam ELK domain 333 354 IPR005539 GO:0003677
Vvi11g0654 441 Gene3D - 352 425 - -
Vvi11g0654 441 SMART KNOX2_2 221 276 IPR005541 GO:0003677|GO:0005634
Vvi11g0654 441 ProSiteProfiles ELK domain profile. 333 353 IPR005539 GO:0003677
Vvi11g0654 441 SMART HOX_1 355 420 IPR001356 GO:0003677
Vvi11g0654 441 Pfam KNOX1 domain 171 212 IPR005540 GO:0003677|GO:0005634
Vvi11g0654 441 MobiDBLite consensus disorder prediction 133 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0654 Vvi-Chr11 6585252 6590529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0654 1 429 Homeobox Transcription Factor Family AT5G25220 63.739 2.92e-180 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vvi11g0654 KNOX2 3.7e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0654 - - vri:117924649 830.476