Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0651 ATGGCTGGAATGCTTCCTGGTGTGGAATGTGCTCGAAGGAGACGATTCCACCAGAGTGGAGGGTGCTCGGACTCTCCGACGGTGGCGGTCCACGGCTGCACAAGGCGGTCCTCTTTCTGTCTCTATACAAGCAACCATGAAAACCACCACGCCACTTCAAGCTCTTCTATGCAAAGAAGCGTATTGAACCAAGCATACAGCGACGAGAAACTGGGAGGCGTGGCGAGAGAAGCCAAGGAAAGATTGGATGAGAGGCTGAGAACCCAAAGAAAATCAGAACCCACAAGGAATAAGAGCAAGGAAAGCTTGAGGATAGTAGATGGAAGAGCCATGGTGGTAGGGGAACTGCAGACAGAGGTGTTTGGATCAAAGAGGAGTGGTTCAAAGAGATTCAGCTGGGGCAAGTTGAGCTGGAAGGCCTCAGACCAAGTGGAGTGCGCGATCTGCCTGGAGGGGTTCAAGGCTGGCGAGAGCCTGGTGCACCTGCCCTGCGCTCACCGTTTCCACTCAAGGTGTTTGATGCCATGGCTGGAGACTAATGCCCATTGTCCATGTTGCAGAATGGGGATCTTTGTTTCTTAA 582 0.5275 MAGMLPGVECARRRRFHQSGGCSDSPTVAVHGCTRRSSFCLYTSNHENHHATSSSSMQRSVLNQAYSDEKLGGVAREAKERLDERLRTQRKSEPTRNKSKESLRIVDGRAMVVGELQTEVFGSKRSGSKRFSWGKLSWKASDQVECAICLEGFKAGESLVHLPCAHRFHSRCLMPWLETNAHCPCCRMGIFVS* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0651 193 ProSiteProfiles Zinc finger RING-type profile. 146 187 IPR001841 -
Vvi11g0651 193 SMART ring_2 146 186 IPR001841 -
Vvi11g0651 193 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 190 IPR013083 -
Vvi11g0651 193 SUPERFAMILY RING/U-box 136 191 - -
Vvi11g0651 193 MobiDBLite consensus disorder prediction 80 101 - -
Vvi11g0651 193 Pfam Ring finger domain 145 187 IPR001841 -
Vvi11g0651 193 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 43 188 - -
Vvi11g0651 193 FunFam Zinc finger family protein 120 192 - -
Vvi11g0651 193 CDD RING-H2_PA-TM-RING 145 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0651 Vvi-Chr11 6552921 6553685 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0651 1 87 C3H Transcription Factor Family AT2G15580 56.250 6.01e-26 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0651 - - vvi:100241393 403.675