Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0649 ATGGGCTCCAGCAGCAGTCGTCTGGGTTCGCGTTCTTCTCGGCCACGACTCAACCGCAGGCTCTCCTCTCTTATCTGCGGTGGCTCCACTTCTCGAGCTCAGCCCGAGATTGAAGATTGTCCAGCTGAATTACTGGTGAATGCTATAGAACACAATGATCCTGTGACTGTCGAACAAAGCTCAACAAAGGCATCCCATTTGGCCTCCAGTGCTGGGACTGCATTTACCAGCACCAGAACTGAAACAGGAACTTCATCTGAGAGCAGTAGCGCAGCAAGGGAAGATACTTCTTTTATCAATGATTTAAGCAATATCGAAACAAGTAATCGAGGGAAATGCTTATCTGAAAGTAAGGAATTGATTCCTCCTCATCTGGATCTGCATCCTTTGGACCCTGTCTCTGCAAATGCAAGGGCTAACATGGGTGCTGTAAATGTTCATAACTCAATGGACAAGGATAGGTCTAACAGTGGTGCAGGGGTCATACATTCAAGCAGTTCGCATGCTCCAGAGCATAGAGCTTCATATTCAGATGGGGCATCTGCTGAAAATCATGTGAGCGGAGTATCAGCCATTGATAATTCTAGTTCTGTTTCTGTTCCTGCTGTCACTGACTCACCAGTGACTTTGCACTCACAAGGAGATGAATCCATTCAAGAGGCGATACCTTCAGGTCTGGGAATTGTGGTCTCCGATCGGGCTGATAGGGAGCGAGGTCGGAGAGATGGAAGTGTACTTCATGTTGATGTGGTGAGCATCTCTTCCAACATTTTGTCTAGTACCACTGCTGAAGTAAGTAACCGTGAGGCAAGAAGGAATAGTAGAAGACTGTTCTGGGATGCCTTTTCAAGACGCAGTTCTCGAAGGCATAGTGATTCCCCAACCATTGTCTTCTCAACAGATGATACTGATGACCTAGGATCTCATGACAGATGGCTCCTTGATTTCAGTGGTGATTTCTTTGAAGATGGGGTTGGAGGTGACTCTGGCTACCTGGGTAGTAGAATCCACAGCATGAATGAGCGAAGGTGGCACTCAAGATCGGAGATATGGGAAAGGCTTCGTGGTGGGCTTGATGAGAGTAGTCGGCGAACTACTACTTGTCCAACAGGCCTCCACCCTGATGGTATGTGCTCCTGCGATTCCTTCTTGATGGCTGAAGAATCTAGCACTCGAGCAAGCATCTCCCGAATAGTCATGCTAGCTGAAGCCTTATTTGAGGTCTTGGATGAAATTCACCGCCAACCTGTCTCACTGGCACTGTCTATGGTATCACTCCCTGCCCCAGAGTCGGTTGTTGACTCTTTTCCTCTCAAGAATCACAAAAAGGCCGACACAGCTCAGAGTGGGGAGGATGTGGCACAGTGCTACATTTGTCTGGCTGAGTATGAGGAAGGTGATAAAATTAGAGTTCTTCCCTGCCACCATGAGTATCATATGTCATGTGTTGATAAATGGCTCAAAGAAATACATGGGGTGTGCCCACTATGCCGCGGAGATGTTCGTGAGGGCCTTACTGGTGGTTCTGTCTCAAACGGAGAGACCCCCTCTCTTTGA 1557 0.4798 MGSSSSRLGSRSSRPRLNRRLSSLICGGSTSRAQPEIEDCPAELLVNAIEHNDPVTVEQSSTKASHLASSAGTAFTSTRTETGTSSESSSAAREDTSFINDLSNIETSNRGKCLSESKELIPPHLDLHPLDPVSANARANMGAVNVHNSMDKDRSNSGAGVIHSSSSHAPEHRASYSDGASAENHVSGVSAIDNSSSVSVPAVTDSPVTLHSQGDESIQEAIPSGLGIVVSDRADRERGRRDGSVLHVDVVSISSNILSSTTAEVSNREARRNSRRLFWDAFSRRSSRRHSDSPTIVFSTDDTDDLGSHDRWLLDFSGDFFEDGVGGDSGYLGSRIHSMNERRWHSRSEIWERLRGGLDESSRRTTTCPTGLHPDGMCSCDSFLMAEESSTRASISRIVMLAEALFEVLDEIHRQPVSLALSMVSLPAPESVVDSFPLKNHKKADTAQSGEDVAQCYICLAEYEEGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCRGDVREGLTGGSVSNGETPSL* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0649 518 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 421 503 IPR013083 -
Vvi11g0649 518 Pfam Ring finger domain 455 498 IPR001841 -
Vvi11g0649 518 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 517 - -
Vvi11g0649 518 SUPERFAMILY RING/U-box 455 503 - -
Vvi11g0649 518 MobiDBLite consensus disorder prediction 1 36 - -
Vvi11g0649 518 SMART ring_2 456 497 IPR001841 -
Vvi11g0649 518 MobiDBLite consensus disorder prediction 149 172 - -
Vvi11g0649 518 FunFam Putative RING zinc finger domain superfamily protein 423 503 - -
Vvi11g0649 518 MobiDBLite consensus disorder prediction 56 103 - -
Vvi11g0649 518 ProSiteProfiles Zinc finger RING-type profile. 456 498 IPR001841 -
Vvi11g0649 518 MobiDBLite consensus disorder prediction 148 182 - -
Vvi11g0649 518 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0649 Vvi-Chr11 6533902 6541971 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0649 370 501 C3H Transcription Factor Family AT5G45290 54.795 8.54e-43 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0649 - - vvi:100263653 942.184