Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0643 ATGTGTGTCAAGGACTCTGAACAGGTCTCTGAAGAAATGGAGAATTCTAGTCTAAGTGATCATGATGCCACCAAGTTGGGTAATTCATTTCCGCTGCAAAGCATTTCAGAAGATAAAGTGGCTTCAGACAAAGAACAGAACCTGGTATCCATCTTTGTCCCTGCTCTTCGATCAGGGGAGTGGTCTGATATTGGGGGTCGGCCCTATATGGAGGACACTCACATATGCATCAGTGACCTGGCTAAGAAGTTCAATCATAATTTGCTTGATAAGGAAGCTATATCCTTCTATGGTGTATTTGATGGTCATGGAGGAAATGCTGCAGCGCAGTTTGTCCGTGACCACTTGCCAAGGGTCATTGTCGAGGACGCTGATTTCCCCTTAGCACTGGAGAAGGTAGTTATGAGGTCATTTATAGAGACAGATGCTGAATTCGCAAAGACATGCTCTCTTGAGTCTTCCCTGTCTTCTGGCACAACTGCACTTACAGCGATGATATTTGGGAGGTCTTTGCTTGTGGCAAATGCTGGGGATTGCCGGGCAGTGCTGTCACAGCTCGGAGTGGCTATAGAAATGTCGAAAGATCACAGGCCATGCTGCACAAGAGAAAGGAGCAGGATTGAGTCCCTGGGTGGATACATTGATGATGGGTATCTAAATGGTCAGATATCCGTCACCCGTGCGCTTGGTGATTGGCACCTTGAAGGACTGAAAGATATTGGTGAAAGGGGTGGACCTTTGAGTGCTGAACCAGAACTTAAACTAATGACACTAACCAAAGAACATGAGTTCTTAATCATAGGCAGTGACGGAATCTGGGAGGTGTTTAGGAGCCAAAATGCAGTAGATTTTGTCCGGAGGAGACTCCAAGAGCACAACGATGTGAAGCTATGCTGCAAGGAAGTAGTTGAGGAAGCAATTAAGCGTGGAGCAACAGACAATCTCACGGTTGTGGTAGTGAGTTTTCACTCTGAGCCACCACCACTGAAGGAGGTGGTACGAAGGGCAAGAGTGACAAGAAGCATTTCAGCAGAGGGGCTTCAAAATCTCAGATCTCTGTTAGAAGGATAG 1071 0.4659 MCVKDSEQVSEEMENSSLSDHDATKLGNSFPLQSISEDKVASDKEQNLVSIFVPALRSGEWSDIGGRPYMEDTHICISDLAKKFNHNLLDKEAISFYGVFDGHGGNAAAQFVRDHLPRVIVEDADFPLALEKVVMRSFIETDAEFAKTCSLESSLSSGTTALTAMIFGRSLLVANAGDCRAVLSQLGVAIEMSKDHRPCCTRERSRIESLGGYIDDGYLNGQISVTRALGDWHLEGLKDIGERGGPLSAEPELKLMTLTKEHEFLIIGSDGIWEVFRSQNAVDFVRRRLQEHNDVKLCCKEVVEEAIKRGATDNLTVVVVSFHSEPPPLKEVVRRARVTRSISAEGLQNLRSLLEG* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0643 356 Gene3D - 34 326 IPR036457 -
Vvi11g0643 356 FunFam Probable protein phosphatase 2C 22 39 325 - -
Vvi11g0643 356 PANTHER PROTEIN PHOSPHATASE 2C 36 321 IPR015655 GO:0004722|GO:0006470
Vvi11g0643 356 SUPERFAMILY PP2C-like 48 324 IPR036457 -
Vvi11g0643 356 ProSiteProfiles PPM-type phosphatase domain profile. 57 322 IPR001932 -
Vvi11g0643 356 SMART PP2C_4 47 320 IPR001932 -
Vvi11g0643 356 CDD PP2Cc 57 322 IPR001932 -
Vvi11g0643 356 MobiDBLite consensus disorder prediction 1 25 - -
Vvi11g0643 356 MobiDBLite consensus disorder prediction 1 19 - -
Vvi11g0643 356 ProSitePatterns PPM-type phosphatase domain signature. 96 104 IPR000222 GO:0043169
Vvi11g0643 356 Pfam Protein phosphatase 2C 69 314 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0643 Vvi-Chr11 6468109 6472819 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0643 50 356 PP2C-type Phosphatase Gene Family AT2G25620 59.486 7.22e-129 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Vvi11g0643 PP2C 4.6e-66 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0643 K14803 - vvi:100243121 698.353