Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0639 ATGGGATGCACAGCTGAAGATCCAATGGCTGGTGGAAAAGAAAACGAAATAGAGATAAAAATAAAGACATTGGATTCCCAAACTTACACAATGCGTGTAAATAAGCAGGTACCAGTGCCTGATTTAAAACAACAGATTGCTACAGTTACAGGTGTCTTATCAGACCAACAACGTCTCATATGCCGCGGAAAAGTTCTAAAGGATGATCAACGCCTCTGCGCCTATCATGTTGAAGATGGTCACACTTTGCATCTGGTTACCAGACAACCAGTTCCACCATCATCTGAGGGTTCACATAATCAATCAGATGCTATTCCTGGTTTGGGTATGAGTCATGGTCAAGACAATCAGGTAGCTCCTGGGTTTCTACCTGAAAATTTGAATGTGCCTAATCAAGGTGATGCCATTCCTCCAGAAATTAATCAGCTTGTTTCTGCTGTTCTTGGTGCTTTTGGAGTTAATGATATTGGTGGTAATCAGGGGCCTGATGCTAGGGTCGTGCCTGATTCTTTGACTACTTTGTCCCAGTATCTGAGTCGATTGAGGCGTGAGTTTGGCAGAGGCAATGGAAACAATGTGCAGACTGCTGATATCCATGGTACTGCAGAAAGAGAATCTAATTCCATATTGCATTCAGTGACTGCACCGGGCCTTACTCCAACAGCATCCTTGGCAGAATTGATGCTGTCTGCAAGGCAAATGCTTATTGAACAAGTTGGAGAATCCCTACTGCAACTACAGAGGCAGCTAGAGAATCAAGAGACTGCGACTAATCTGTCTGAGAGGCGGGACATTCAGTTTAGCGCAGGGAGAACAGGAGTTTTGCTTCAAAATGTTGGTGCATTTCTACTTGAACTTGGTCGTACAACCATGACACTGATCATGGGTCAAATGCCGTCTGAAGCTATGGTTAATACTGGGCCTGCACTTTTCATATCCCCATCTGGTCCTAATCCTCTCATGGTTCAGGCTCAGCCTTTTCAACCAGGAACAAGTTTTGGTTCATTCTCCACGGGAACTGCACAGCCTGGCTCTGGTTTGGTTAATGGATTTGGTTTTCTTCCAAGGCGTATTGATATACAAATCCGTAGAGGTTCTTCAATGGTCACTCCCAATGTTAACCAAGTGGAACATGGTTATACTAATCAGCCTTCAGGCCAAAGAAACCCAGTAACAAGTTCTGGTGGTGAAAACCCAGCAACTTCTCTGGTTTCAGAGGGTTCATCTATTGCTGCAGTACCAATGAGGTCCATGCTTGGAGCAGTATCTGGTCCATTTAATAGTGTTCTTTCTGATCCATCCAGTGGTCTTTTAGGCTTGTACCCAGTTCTTGGAAGATTACAACATGTGGGTTCTGGACATGCAATTGATGAGCTAGGATCTCAAGCATCTGGTGAACATCAAGCCACTGGCTTCCAAACCGAGCAGCTCAATGAAGGTGGTCGCACAACAGAAGGATCATTGCCAACTCCTAGTTTAAGACACCTGGCACCATCTGAATCCCAGAATTTCAGAATCAACCTTCAGTCAACCAATGGGACCATAACTAATCCAGAAGCTGAGGGACATATGCCCAGCAGTGTCCTTCAGTTTCTAAGGACCATGTTTGCAGGTGGAGAAATTGAACATGTCGAGGATTTCAATTCACAAGGAATAGCTACAAATCCCGTCACAGAGCATTCAGAGGCAGCCGCTGGTGCCATGGATGCTCAGCAAGCAGAACCAGAAGTTACTGATGAAGGGATCTTCTTGTCCAATATGCTTCGAGAGATGATGCGCTTCATATCTCAAGATGTGGACCCAAATGTCGCACCTCCTGAAGGATCAAGTGCTTCAGAGCATGGAACTGATTCTTCCTCCCAAGCTGAGAGCTCTGTTGCTGGGACTTTGCGACGGGAAAGTGATAATCAGGCAAGCCCCCCAAATTCAAAACGTCAGAAGATGGATGATTCATCCTGA 1959 0.4523 MGCTAEDPMAGGKENEIEIKIKTLDSQTYTMRVNKQVPVPDLKQQIATVTGVLSDQQRLICRGKVLKDDQRLCAYHVEDGHTLHLVTRQPVPPSSEGSHNQSDAIPGLGMSHGQDNQVAPGFLPENLNVPNQGDAIPPEINQLVSAVLGAFGVNDIGGNQGPDARVVPDSLTTLSQYLSRLRREFGRGNGNNVQTADIHGTAERESNSILHSVTAPGLTPTASLAELMLSARQMLIEQVGESLLQLQRQLENQETATNLSERRDIQFSAGRTGVLLQNVGAFLLELGRTTMTLIMGQMPSEAMVNTGPALFISPSGPNPLMVQAQPFQPGTSFGSFSTGTAQPGSGLVNGFGFLPRRIDIQIRRGSSMVTPNVNQVEHGYTNQPSGQRNPVTSSGGENPATSLVSEGSSIAAVPMRSMLGAVSGPFNSVLSDPSSGLLGLYPVLGRLQHVGSGHAIDELGSQASGEHQATGFQTEQLNEGGRTTEGSLPTPSLRHLAPSESQNFRINLQSTNGTITNPEAEGHMPSSVLQFLRTMFAGGEIEHVEDFNSQGIATNPVTEHSEAAAGAMDAQQAEPEVTDEGIFLSNMLREMMRFISQDVDPNVAPPEGSSASEHGTDSSSQAESSVAGTLRRESDNQASPPNSKRQKMDDSS* 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0639 652 MobiDBLite consensus disorder prediction 89 112 - -
Vvi11g0639 652 MobiDBLite consensus disorder prediction 89 107 - -
Vvi11g0639 652 MobiDBLite consensus disorder prediction 599 652 - -
Vvi11g0639 652 MobiDBLite consensus disorder prediction 609 646 - -
Vvi11g0639 652 SUPERFAMILY Ubiquitin-like 12 103 IPR029071 -
Vvi11g0639 652 MobiDBLite consensus disorder prediction 463 496 - -
Vvi11g0639 652 ProSiteProfiles Ubiquitin domain profile. 17 92 IPR000626 GO:0005515
Vvi11g0639 652 MobiDBLite consensus disorder prediction 369 403 - -
Vvi11g0639 652 PRINTS Ubiquitin signature 48 68 IPR019956 -
Vvi11g0639 652 PRINTS Ubiquitin signature 69 90 IPR019956 -
Vvi11g0639 652 PRINTS Ubiquitin signature 27 47 IPR019956 -
Vvi11g0639 652 SMART ubq_7 17 88 IPR000626 GO:0005515
Vvi11g0639 652 MobiDBLite consensus disorder prediction 462 496 - -
Vvi11g0639 652 FunFam Large proline-rich protein BAG6 9 102 - -
Vvi11g0639 652 Gene3D - 11 105 - -
Vvi11g0639 652 Coils Coil 236 263 - -
Vvi11g0639 652 Pfam Ubiquitin family 19 89 IPR000626 GO:0005515
Vvi11g0639 652 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 5 652 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0639 Vvi-Chr11 6433485 6446120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0639 17 88 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 38.889 2.16e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0639 K23390 - vvi:100260199 1281.16