Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0637 ATGCATGACCGTTACAGAGACATGAGGCTTGATGTGGATAACATGTCCTATGAGGAGCTCCTGGCCCTGGAAGATCATATGGGGTATGCCAATACTGGTTTGTCTGAGGAAGAAGTTCTGGAATCCCTCAAACATACTAAATACTTTTTATTTGGAGAAGAGAATGCTAGTAAAGAATGTTGCAGCATCTGCCAGGAGGACTATGTGGAAGACGATGAATTGGGAGTACTGGATTGTGACCATAGCTTCCATAGTGCTTGTATTCAACAGTGGCTAAGAAGCAAAAATCTCTGCCCAATATGCAAATCTACTGGTTTATCTACAACAGGGCTTGTACTCCCACAGATTCATAGTCTGTAA 360 0.425 MHDRYRDMRLDVDNMSYEELLALEDHMGYANTGLSEEEVLESLKHTKYFLFGEENASKECCSICQEDYVEDDELGVLDCDHSFHSACIQQWLRSKNLCPICKSTGLSTTGLVLPQIHSL* 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0637 119 ProSiteProfiles Zinc finger RING-type profile. 61 102 IPR001841 -
Vvi11g0637 119 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 107 IPR045191 GO:0061630
Vvi11g0637 119 SMART ring_2 61 101 IPR001841 -
Vvi11g0637 119 Pfam Ring finger domain 61 102 IPR001841 -
Vvi11g0637 119 SUPERFAMILY RING/U-box 60 105 - -
Vvi11g0637 119 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 105 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0637 Vvi-Chr11 6397984 6398548 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0637 1 108 C3H Transcription Factor Family AT2G15530 56.250 1.23e-38 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0637 - - vvi:100854550 252.677