Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0608 ATGATGGGAAGGGGGAAGCTTATATTAATTTGTCAGTCCGGTGGTAAGTTTGTAACAAATGACGAGGGGTCCTTGTCATATACTGGAGGAGAGGCACATGCAGTAAATATCAATCATGAAACATTTTTTGATGATCTCAAGTTGAAATTAGCTGAAATGTGGAATTTGGAATACCAATCCTTGTCGATCAAGTACTTTCTTCCTGGAAACAGGAAAACTCTGATCACTTTATCCACCGACAAAGACCTAAAGAGGATGATAGGTTTCCATGGGGATTCAGTAACAGCAGATGTTTTTGTTATGGGAAGAGAGGGTTTTGATAGTCATGCTCTGAACATCCATGCTTGCAGGGAAAGTGGGATAAAACTGGCTGAGACGGTAAACCATATTGCTGTCTCCATGACGCCGGCTGTAGCACCTCAACCTTTCGCAATTGCTCCTGTTTCTCTTGGTGTAATGCCTTCTGGTGCCTTTCCTATTGATCCTGTTACAGTTGTTACAGATGTAGCATCCCCAGACACTACTACAACAGTTGCTCATGCCGCTGTGACCGTCAGCCCAGTTGCTCCTGCAACTTTTCTTGTATCAACAGTTGCTGACTCTCTAACTGCTGTTGATGCAACTGCCCAAAGTCTCAATGGAATTAGTACTACTGCAAACCCTTTTGCTGCCTTTACCATCACTGGTGATCCAAGTGCTGCTGCCCCAACCCCAACTGTACCTGTTGTTATTGCTGCCATAGATGCAACTGCTCACGGCTCGGTCATCTTAGATATAACCTCAACCCCAGCAGACACTGTTAAGAAGCGAAGACGGACTGCATCCTGGAAATTTGGTGCCAATAGTCCTACTATCGTTTCTGTCACTGATGATGTTGGGGGAAAAAAAAGAACTGCATCTCGGAAAAAAAATTCCCGAAGTCAGAATACTGTTCCAGTAGCTGATAATGTGGAGCAGCAACAAGAGAATGGACCCTGGAAAGATGACTTCAATGGTTCCTCTAGTCTTGTCGCATCTGATGATGTTCCACTGGAAAAATTAGTTGCATCATGGAAAGATGGCATTACCGGTGTTGGCCAGGAATTCAAAAGTGTCTATGAATTTCGTGAGGCACTGCAGAAATATGCAATTGCACATCGCTTTGTTTACAGATTAAAAAAGAATGACACTAATCGAGCAAGTGGCAGATGTGTCGCTGAAGGCTGTTCTTGGAGGATCCATGCATCTTGGGTACCAGCTGCACAATCGTTTAGGATAAAAAAGATGACCAAGTCACACACATGTGGAGGACAATCCTGGAAGTCTGCTCATCCTACAAAGAATTGGTTAGTGAGTATCATAAAGGATAGGTTACAAGATACTCCACATCACAAACCCAAGGATATTGCAAAATGCATTTTCCAGGACTTTGGAATTGAATTGAACTATACACAAGTATGGCGTGGAATTGAGGATGCCAGGGAGCAACTTCAAGGTTCGTACAAAGAGGCATATAATCTGTTGCCCTGGTTTTGTGAGAAGTTGGTGGAAACAAATCCTGGTAGTGTTGCTAAGCTTTTAATCAATGATGACAAAAGATTTGAACGCCTTTTTGTGTCCTTTCATGCCTCATTACATGGTTTCCAGAATGGATGTCGCCCCCTTCTTTTCCTTGATGCTACCTCTCTAAAATCAAAATACCAAGAGATTTTATTGATAGCTACTGCAGTGGATGGTAATGAAGGATTTTTCCCAGTAGCATTTGCTATAGTAGATGTGGAGACTGATGATAATTGGCTATGGTTCTTAGAGCAGTTGAAATCTGCAATATCAACATTACAACCGATGACCTTTGTCTCTGATAGAGAGAAGGGCTTAAAGAAATCTGTGCTTGAGGTATTTGAGAATGCCCATCATGGTTACTCCATATACTACCTTATGGAAAACTTCAAGAAAAACTTGAAGGGTCCATTCCATGGAGATGGAAGGGGTTCTTTGCCTATCAACTTCTTGGCTGCTACCCATGCTATCCGACTTGATGGTTTTAAGAAGTCCACTGAGCAAATTAAACGGGTTTCTTCAAAAGCATACAACTGGGTCATGCAAATTGAGCCAGAGTGCTGGGCAACTGTATCATTTGAGGGTGAGCACTACAACCAGATTACAGTAGATGTTATTCATGCATATATTAACTTGATAGAGGAGGTGCGAGAGTTACCTATAATACAGAAGATAGAGGCGCTCATATGTATGATAATGGAGTCGATCAATACCTGTCAAACAGATTCGAGTACGTGGTCTTCACAGCTTACTCCATCTAAGGAGGAAAAACTACAAGATGAAATTATAAAAGCTCGCAGCCTTAAAGTGTTATTCTCTACTGATACCCTATTTGAGGTCCATGATGACTCCATTAATGTAGTGAATATTGATAGCTGGGACTGTAGTTGCCTGCAGTGGAAAGCGACAGGGCTACCTTGCTGCCATGCGATTGCCGTCTTCAATTGCACAGGAAGGAGTGTATATGATTACTGTTCCAGATACTTCACTCTCAATAGCTTCCGGTTGACATATTCGGAATCAATAAACCCTTTGCCTAGCATCATTAAGTCTTTGGATAATGAAGAAGCTGCATTGCACACTCTGAATGTGCTTCCTCCTTGTACATTGCGGCCATTGAGCCAGCAGAAGAGGAAAAGGGTCAAAACAGAAGAGGTTATGAGAAGGGCAGTTTCTTGCACCAGATGCAAGTTAGCTGGGCACAACAAAGCTACGTGCAAGGCAACCTTATAG 2772 0.4253 MMGRGKLILICQSGGKFVTNDEGSLSYTGGEAHAVNINHETFFDDLKLKLAEMWNLEYQSLSIKYFLPGNRKTLITLSTDKDLKRMIGFHGDSVTADVFVMGREGFDSHALNIHACRESGIKLAETVNHIAVSMTPAVAPQPFAIAPVSLGVMPSGAFPIDPVTVVTDVASPDTTTTVAHAAVTVSPVAPATFLVSTVADSLTAVDATAQSLNGISTTANPFAAFTITGDPSAAAPTPTVPVVIAAIDATAHGSVILDITSTPADTVKKRRRTASWKFGANSPTIVSVTDDVGGKKRTASRKKNSRSQNTVPVADNVEQQQENGPWKDDFNGSSSLVASDDVPLEKLVASWKDGITGVGQEFKSVYEFREALQKYAIAHRFVYRLKKNDTNRASGRCVAEGCSWRIHASWVPAAQSFRIKKMTKSHTCGGQSWKSAHPTKNWLVSIIKDRLQDTPHHKPKDIAKCIFQDFGIELNYTQVWRGIEDAREQLQGSYKEAYNLLPWFCEKLVETNPGSVAKLLINDDKRFERLFVSFHASLHGFQNGCRPLLFLDATSLKSKYQEILLIATAVDGNEGFFPVAFAIVDVETDDNWLWFLEQLKSAISTLQPMTFVSDREKGLKKSVLEVFENAHHGYSIYYLMENFKKNLKGPFHGDGRGSLPINFLAATHAIRLDGFKKSTEQIKRVSSKAYNWVMQIEPECWATVSFEGEHYNQITVDVIHAYINLIEEVRELPIIQKIEALICMIMESINTCQTDSSTWSSQLTPSKEEKLQDEIIKARSLKVLFSTDTLFEVHDDSINVVNIDSWDCSCLQWKATGLPCCHAIAVFNCTGRSVYDYCSRYFTLNSFRLTYSESINPLPSIIKSLDNEEAALHTLNVLPPCTLRPLSQQKRKRVKTEEVMRRAVSCTRCKLAGHNKATCKATL* 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0608 923 ProSiteProfiles Zinc finger SWIM-type profile. 799 831 IPR007527 GO:0008270
Vvi11g0608 923 Pfam MuDR family transposase 355 419 IPR004332 -
Vvi11g0608 923 SUPERFAMILY CAD & PB1 domains 22 93 - -
Vvi11g0608 923 Pfam MULE transposase domain 549 642 IPR018289 -
Vvi11g0608 923 PANTHER POLYPROTEIN, PUTATIVE-RELATED 346 890 - -
Vvi11g0608 923 SMART PB1_new 20 103 IPR000270 GO:0005515
Vvi11g0608 923 MobiDBLite consensus disorder prediction 289 311 - -
Vvi11g0608 923 Pfam SWIM zinc finger 801 829 IPR007527 GO:0008270
Vvi11g0608 923 Pfam PB1 domain 24 90 IPR000270 GO:0005515
Vvi11g0608 923 SMART 26again6 806 833 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0608 Vvi-Chr11 5969800 5972775 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0608 6 87 MAP Kinase Kinase Kinase AT1G79570 32.143 1.85e-07 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0608 - - vvi:100254040 1845.48