Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0599 ATGTCTGCTCAACCCAATGCAGACGAGGAGTCCCAGGCCCAACCACTCCTCGACCCTTCCCTCCATCGATCACTCTCCAACGTTACTTCCCAGGATTGGAGGAGTCGCGGCAAGGTTCAGATCTTTCAGTACATATTCGTGAAGTGGTTGCTGTGTTTTTTGATTGGTTTAATCGTTAGTCTTATTGGGTTCTGCAACAATCTCGCTGTCGAGAACCTCGCCGGCGTCAAATTCGTCATCACGTCGAATATGATGCTTGTAAAGAGGTATGGAATGGCTTTTCTTGTCTTCTTCTCTTCCAATTTTGTTCTCACTCTGTTTGCCTCGATCATCACGGCTTTTATAGCTCCGGCAGCAGCCGGTTCGGGCATTCCGGAAGTGAAGGCTTACTTGAATGGTGTGGATGCACCAGGAATATTTACTCTGAAAACTCTACTTGTTAAGATTGTTGGTAGCATTACAGCCGTGTCATCATCTCTTCTTATTGGGAAGGCTGGGCCCATGGTCCATACTGGTGCATGTGTGGCAGCATTGCTGGGTCAGGGTGGGTCTAGGAAATATGGTTTAACTTGGAGATGGCTACGCTACTTCAAGAATGATAGAGACCGACGAGATTTTGTAACATGTGGATCAGCTGCTGGAATTGCTGCTTCTTTCCGTGCTCCTGTTGGTGGTGTGTTGTTTAGTCTTGAAGAAATGGCATCTTGGTGGAGAAGTGCCCTTCTATGGAGATGTTTCTTCACAACAGCAGTAGTTGCAATTATGCTTCGGGCTCTGATTGATGTTTGCTTAAGTGGAAAATGTGGCCTATTTGGTACAGGGGGTTTGATAATGTTTGACGTCACCTCACAAAATACTACATATCACATAAAGGATGTGCCTCCTGTGCTTGTTCTAGGAGTTATAGGGGGTCTGTTGGGAAGTTTATATAATTTTCTTCTTGAGAAGGTCCTCCGAATTTACAGTTATATTTATGGGAAAAAGCCTATTTACAAAATAATTCTTGCTTGCTCAATCTCTGTTTTCACATCTTGTCTTCTATTTGGATTACCATGGCTTGCATCCTGCCAACCTTGCCCAATTGATGCATCAGAAGCTTGTCCTACAATAGGCCGGTCTGGTAACTACAAGAAGTTCCAGTGTCCTCCTGGTCACTACAATGATCTAGCCAGTCTTATTTTCAACACAAATGATGATGCCATAAAAAATCTTTTCAGCAAAGACACTGATTCGGAGTTCCAATACTCATCAATTCTTATATTTTTTGCCACCTGCTTTTTTCTCAGTATCTTTAGCTATGGTATTGTGGCTCCTGCGGGTCTATTTGTACCTGTTATTGTGACAGGTGCATCTTATGGACGTTTCGTTGGAATGTTAGTTGGTTCACACTCGAATCTTAACCACGGCCTCTTTGCTGTGCTGGGCGCTGCATCTCTTCTTGGTGGATCTATGAGGATGACAGTTTCCTTGTGTGTCATTATCCTAGAACTGACCAATAATCTCTTATTACTTCCCCTGATAATGGTGGTTCTTCTTGTTTCCAAAACTGTAGCTGACGCTTTTAATGGAAATGTTTATGACATTATTATGAAATTGAAGGGATTTCCTTACTTAGAAGCACATGCCGAGCCATACATGAGGCAGCTGACAGTTGAGGATGTAGTCACGGGTCCACTTCAGCTCTTTAATGTCATTGAGAAGGTTGAAAATATAGTACATGTTCTCAGAACTACAGGACATCATGGATTCCCTGTGATTGATGAACGTTCACATTCTGAATCACCAGTTTTGTTTGGTTTAGTCCTCCGTGCCCATCTTATTGTATTGCTTAGGAAGAAAGCTTTCTTAACCACTGCTGTTCGAGCAGACAGTGATGCCTTTAGGCACTTCTCAGCTATGGATTTCACAAAGAGGGGATCAGGCAATGGTGACAAGATAGAGGATATAGAACTGACCGAAGAAGAGATGGAGATGTTCATAGATTTGCATCCATTTTGCAATTCTTCGCCATATACTGTTGTGGAGACAATGTCATTAGCAAAGGCTCTCATACTTTTCCGAGAAGTTGGCTTAAGACATCTGCTGGTGATCCCCAAGATCTCTAATAGGTCTCCAGTAGTGGGTATATTGACGAGACACGATTTTATGCCAGAACATATTCTGGGTGTGCATCCTCTGCTGGTAAGGAGCAGGTGGAAAAGAATAAGATTTCAGCTTCCTCGTTTTCTAAAACTCTTTTGA 2241 0.4302 MSAQPNADEESQAQPLLDPSLHRSLSNVTSQDWRSRGKVQIFQYIFVKWLLCFLIGLIVSLIGFCNNLAVENLAGVKFVITSNMMLVKRYGMAFLVFFSSNFVLTLFASIITAFIAPAAAGSGIPEVKAYLNGVDAPGIFTLKTLLVKIVGSITAVSSSLLIGKAGPMVHTGACVAALLGQGGSRKYGLTWRWLRYFKNDRDRRDFVTCGSAAGIAASFRAPVGGVLFSLEEMASWWRSALLWRCFFTTAVVAIMLRALIDVCLSGKCGLFGTGGLIMFDVTSQNTTYHIKDVPPVLVLGVIGGLLGSLYNFLLEKVLRIYSYIYGKKPIYKIILACSISVFTSCLLFGLPWLASCQPCPIDASEACPTIGRSGNYKKFQCPPGHYNDLASLIFNTNDDAIKNLFSKDTDSEFQYSSILIFFATCFFLSIFSYGIVAPAGLFVPVIVTGASYGRFVGMLVGSHSNLNHGLFAVLGAASLLGGSMRMTVSLCVIILELTNNLLLLPLIMVVLLVSKTVADAFNGNVYDIIMKLKGFPYLEAHAEPYMRQLTVEDVVTGPLQLFNVIEKVENIVHVLRTTGHHGFPVIDERSHSESPVLFGLVLRAHLIVLLRKKAFLTTAVRADSDAFRHFSAMDFTKRGSGNGDKIEDIELTEEEMEMFIDLHPFCNSSPYTVVETMSLAKALILFREVGLRHLLVIPKISNRSPVVGILTRHDFMPEHILGVHPLLVRSRWKRIRFQLPRFLKLF* 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0599 746 SUPERFAMILY CBS-domain pair 542 716 IPR046342 -
Vvi11g0599 746 SUPERFAMILY Clc chloride channel 31 541 IPR014743 -
Vvi11g0599 746 Gene3D - 538 718 IPR046342 -
Vvi11g0599 746 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 26 722 - -
Vvi11g0599 746 Pfam CBS domain 665 715 IPR000644 -
Vvi11g0599 746 PRINTS Plant CLC chloride channel signature 389 405 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vvi11g0599 746 PRINTS Plant CLC chloride channel signature 233 241 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vvi11g0599 746 PRINTS Plant CLC chloride channel signature 247 257 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vvi11g0599 746 PRINTS Plant CLC chloride channel signature 265 272 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vvi11g0599 746 CDD ClC_6_like 31 538 - -
Vvi11g0599 746 FunFam Chloride channel ClC3 40 358 - -
Vvi11g0599 746 Gene3D Clc chloride channel 40 537 - -
Vvi11g0599 746 PRINTS Chloride channel signature 117 134 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi11g0599 746 PRINTS Chloride channel signature 148 167 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi11g0599 746 PRINTS Chloride channel signature 212 231 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi11g0599 746 PRINTS Chloride channel signature 437 457 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi11g0599 746 PRINTS Chloride channel signature 487 506 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi11g0599 746 PRINTS Chloride channel signature 469 485 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi11g0599 746 PRINTS Chloride channel signature 525 539 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi11g0599 746 ProSiteProfiles CBS domain profile. 666 726 IPR000644 -
Vvi11g0599 746 CDD CBS_pair_voltage-gated_CLC_euk_bac 550 718 - -
Vvi11g0599 746 Pfam Voltage gated chloride channel 105 519 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0599 Vvi-Chr11 5810804 5819121 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0599 5 742 Ion Channels AT5G33280 74.084 0.0 1134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0599 K05016 - vvi:100255837 1394.41