Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0598 ATGGAATTTAGTAACATTATCTTCTTGAGAATGGCTGCAGTTGTGTTCAGTCTTTTGCTGTTAGTGCAATTGCCAAGAATCCTTGCCTCTGACTTGGGAATACAGTCAAAAGTTTGCGGTACTGATCATGTTGCCTATTTGAATTCCCATGGCTATGAATTGTTTTACATAAATGGGGATGTAGTAGATAAAGATGTGTTCTGTAAGGCCCTGAAAGTCTACTATGCAAATAATTGCGTCTTTGAAGGACATCCTGGAAGTAACTACTGTGGATTGAATCTTCCATTAGTTGAGTTGCCTGCAAACGCAGGAAGAAAATTTTTGAGAAGGCTGATTCAGGAAGAGTCCACAATAGATAATCTGAACAATCATGAGAGAGAAACCAAGCATCGCAAATCTGCCTCATCTCCTAAGGTGATAGCCATGGCAGTACCTGGAATTTTAGTTCTGTGCTGCAGTTTACTTTGTCCTTGCTTCCGTGCAAAAAGAAAAGAAACTGATCATGCTGTTCTTTCCAAGGAACCAATTTCAAATTCAATTTCCTCTTTTGAAGTGATCTCTGCTCCTGAAAAGGTCCCGGCCAGTCCGTTACGAGTGCCACCAAGTCCTTCCCGTTTCTCTATTTCCCCAAAACCCAATAAAATTGAATCAGTGCATCTCAATATGAATCAGATTGCTAGAGCAACCAACAATTTCTCACCCTCACTAAAGATAGGTGAAGGAGGCTTTGGAACTGTCTACAAGGCCCAGTTACAAGATGGCCAAGTGGTTGCCATAAAACGAGCAAAGAAGGAACTCTTTGAGAATCTAAAGACTGAATTCAGAAGTGAAGTTGAACTCTTGGCCAAAATTGATCACCGAAATCTTGTGAAGCTGCTTGGCTACGTTGATAAAGGAAATGAGCGCCTTATTATTACTGAATTTGTGCCAAATGGTACTCTTAGAGAACATCTGGATGGTCAGCGGGGGAAAATCCTGGATTTCAATCAACGACTTGAAATCTCCATTGATGTTGCTCATGCCCTGACTTACCTCCATCTATATGCAGAGAAGCAAATTATCCATCGAGATGTGAAGTCATCCAACATTCTTCTGACGGAGGGCTTTAGAGCTAAAGTGGCTGATTTTGGATTTGCAAGGCTTGGTCCAGTAGACGCTGAGCAAACACATATTTCAACCAAAGTGAAAGGGACAGTTGGTTACCTTGATCCTGAGTACATGAGGACCTATCAACTCACCCCCAAGAGCGATGTGTACTCATTTGGGATTTTGCTAATAGAAATTCTGACTGGGCGCCGGCCTGTGGAATTAAGGAAATCTACCGACGAGAAAGTGACACTTAGATGGGCCTTCAAAAAGTACAATGAAGGAAATGTAGTGGAATTGGGGGATCCTTTAATGGAGGAGGTGGTAGACACAGAGATACTTAATAAAATGTTTGGTTTGGCAATCCAGTGTGCAGCACCCATAAGATCTGATCGGCCGGACATGAAATCGGTGGGAGAGCAGTTGTGGGGTATAAGGATGGACTATGTTAGGAGTGTAAGGAGGGGCTAG 1557 0.4245 MEFSNIIFLRMAAVVFSLLLLVQLPRILASDLGIQSKVCGTDHVAYLNSHGYELFYINGDVVDKDVFCKALKVYYANNCVFEGHPGSNYCGLNLPLVELPANAGRKFLRRLIQEESTIDNLNNHERETKHRKSASSPKVIAMAVPGILVLCCSLLCPCFRAKRKETDHAVLSKEPISNSISSFEVISAPEKVPASPLRVPPSPSRFSISPKPNKIESVHLNMNQIARATNNFSPSLKIGEGGFGTVYKAQLQDGQVVAIKRAKKELFENLKTEFRSEVELLAKIDHRNLVKLLGYVDKGNERLIITEFVPNGTLREHLDGQRGKILDFNQRLEISIDVAHALTYLHLYAEKQIIHRDVKSSNILLTEGFRAKVADFGFARLGPVDAEQTHISTKVKGTVGYLDPEYMRTYQLTPKSDVYSFGILLIEILTGRRPVELRKSTDEKVTLRWAFKKYNEGNVVELGDPLMEEVVDTEILNKMFGLAIQCAAPIRSDRPDMKSVGEQLWGIRMDYVRSVRRG* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0598 518 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 117 508 - -
Vvi11g0598 518 ProSitePatterns Protein kinases ATP-binding region signature. 238 264 IPR017441 GO:0005524
Vvi11g0598 518 Pfam Protein tyrosine and serine/threonine kinase 237 503 IPR001245 GO:0004672|GO:0006468
Vvi11g0598 518 SUPERFAMILY Protein kinase-like (PK-like) 215 508 IPR011009 -
Vvi11g0598 518 ProSitePatterns Serine/Threonine protein kinases active-site signature. 353 365 IPR008271 GO:0004672|GO:0006468
Vvi11g0598 518 ProSiteProfiles Protein kinase domain profile. 232 512 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0598 518 CDD STKc_IRAK 238 504 - -
Vvi11g0598 518 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 309 518 - -
Vvi11g0598 518 Gene3D Transferase(Phosphotransferase) domain 1 309 515 - -
Vvi11g0598 518 Gene3D Phosphorylase Kinase; domain 1 205 308 - -
Vvi11g0598 518 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 204 308 - -
Vvi11g0598 518 SMART serkin_6 232 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0598 Vvi-Chr11 5804516 5809453 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0598 225 507 Receptor kinase-like Gene Family AT3G46290 47.183 1.51e-71 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Vvi11g0598 PK_Tyr_Ser-Thr 5.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0598 - - vvi:100250654 1023.46