LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi11g0589	ATGTCTGGTGATACTGTTTCATATGAGGGTCGATTTGATATTATCTCTCTGTCAGGTTTCTTCTTGCTTTCAGAAGATAATGGTAGCTGCCATAGAACTGGTGGTTTGAGTGTGTCCTTAGCAGGTTCAGATGGTATAGTTCTGGGTGGTGTTCTCAACCCGAATGCCTCGCGTCTGGTAAACAAATGCCTTCTCTTGCAGCCTTACCATCGTTCTTGGCTGCATAAATATTTCTTCCGAAGGCAGTCTTTGCTACTGTCGGTCTTGGTGCCCCTTATTCCTACTTGGCCTTATTCCTGA	300	0.45	MSGDTVSYEGRFDIISLSGFFLLSEDNGSCHRTGGLSVSLAGSDGIVLGGVLNPNASRLVNKCLLLQPYHRSWLHKYFFRRQSLLLSVLVPLIPTWPYS*	100

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi11g0589	99	PANTHER	AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9	1	52	IPR039605	GO:0003680
	Vvi11g0589	99	ProSiteProfiles	PPC domain profile profile.	1	91	IPR005175	-
	Vvi11g0589	99	Pfam	Plants and Prokaryotes Conserved (PCC) domain	8	55	IPR005175	-
	Vvi11g0589	99	CDD	DUF296	2	52	IPR005175	-
	Vvi11g0589	99	Gene3D	-	1	71	-	-
	Vvi11g0589	99	SUPERFAMILY	AF0104/ALDC/Ptd012-like	3	55	-	-

Showing 1 to 6 of 6 entries

Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi11g0589	Vvi-Chr11	5657834	5658133	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi11g0589	2	50	AT-hook Motif Nuclear Localized (AHL) Family	AT2G33620	69.388	2.48e-14	65.1

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi11g0589	-		-	vvi:100245362	89.3521

Showing 1 to 1 of 1 entries