Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0589 ATGTCTGGTGATACTGTTTCATATGAGGGTCGATTTGATATTATCTCTCTGTCAGGTTTCTTCTTGCTTTCAGAAGATAATGGTAGCTGCCATAGAACTGGTGGTTTGAGTGTGTCCTTAGCAGGTTCAGATGGTATAGTTCTGGGTGGTGTTCTCAACCCGAATGCCTCGCGTCTGGTAAACAAATGCCTTCTCTTGCAGCCTTACCATCGTTCTTGGCTGCATAAATATTTCTTCCGAAGGCAGTCTTTGCTACTGTCGGTCTTGGTGCCCCTTATTCCTACTTGGCCTTATTCCTGA 300 0.45 MSGDTVSYEGRFDIISLSGFFLLSEDNGSCHRTGGLSVSLAGSDGIVLGGVLNPNASRLVNKCLLLQPYHRSWLHKYFFRRQSLLLSVLVPLIPTWPYS* 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0589 99 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 52 IPR039605 GO:0003680
Vvi11g0589 99 ProSiteProfiles PPC domain profile profile. 1 91 IPR005175 -
Vvi11g0589 99 Pfam Plants and Prokaryotes Conserved (PCC) domain 8 55 IPR005175 -
Vvi11g0589 99 CDD DUF296 2 52 IPR005175 -
Vvi11g0589 99 Gene3D - 1 71 - -
Vvi11g0589 99 SUPERFAMILY AF0104/ALDC/Ptd012-like 3 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0589 Vvi-Chr11 5657834 5658133 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0589 2 50 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 69.388 2.48e-14 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0589 - - vvi:100245362 89.3521