Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0567 ATGCCTGCCTCCCAGGAAGGTTATACGTGGATAGGAAGCCTAACGATGGGTGACTATAGTTATTCTCATTTCAGAGATATTGATCTTTGGAAGCGCTATTTTACATCGCTATATTTTGCCATTGTTACAATGGCAACTGTTGGTTCTGGAGACATACATGCAGTCAATGTCAGGGAAATGCTATTTGTCATGGCTTATGTCTCCTTTGACATGATTCTTGGAGCTTATCTGCTTGGTAACATGACAGCATTGATCGTCAAAGGATCAAAGACAGAAAAGTTTAGGGATAGAATGGCAGAACTTATTAGCTACATGAACAGAAACAAACTTGGGAGGCAGATAAGTAATGAAATCAAACACCATGTGCGATCGCAGCACGAGACCAGCTACACAGAAGCTGCTTTTCTTCAGGATATTCCAGTGTCTATTCGTGCTAAGATCTCACAAAAGTTATATGGGCCCTACATTAAAGAGGTTTCTCTTTTCAAGGGATGCTCCTCGGGATTCCTTAAGCAGATTGCAACCAGAGTCCACGAGGAAATTTTCCTCCCAGGAGAAGTGATACTTGAAGAGGAAAATATGGTGGATCAACTTTATATTGTCTGTAATGGTAAACTGAAGCGAGTAGGAAGCAATGAAGACGAAATTGAAGGACCTCTGATGCATCTACAAACTAATGACTCATTTGGTGAAATTCCTCTTTTATGTAACACTCCTCTGGCTTATACAGTTCAAGTTGTTGAACTATGCAGGCTTGTGCGACTTGATAAACAATCTTTCATAAACATTCTTGAGATATACTTTTCTGATGGGCAGATCATATTAAACAACCTTCTTGAGGGAAAAGGATCAAATCTTCGAAACAAGATATTGGAATCTGATATCACACTTTATATTGGAAAGCATGAGGCAGAGGTGGCTATGAGGGTAAATTGTGCTGCTTATAATGGAGATTTGTACCAACTAAGGCGTTTGATTGAGGCAGGAGCAGATCCCAATAAGACAGACTATGATGGAAGATCGCCTTTGCATTTTGCGGCATCCAAGGGATATGAAGATATTACTGATTTCCTTATTGAACTGAGAGTGAACATCCATCTTTCAGATAATCATGGAAACACTCCCTTGCTTGAAGCCATAAAGAATGGGCATGATGGAGTCACTTCTTTACTAGTTAAAGCAGGGGCATTATTGACAGTGGAAGACGCTGGTGGCTGTCTCTGCATGACTGTCGTAAGGAGGGATTTAAATTTTTTGAAAAGGCTTTTGGCCAATGGCATTAATCCAAATGCCAAAAATTATGATTCACGAACGCCACTTCATCTTGCTGCCTCAGAAGGGTTATATTCAATGACAAATTTACTGTTGGAAGCAGGGGCAAGTGTTCTCGCAAAGGATAGATGGGGAAATACTCCACTTGATGAAGCTCGCATTGGTGGAAATAAGAATTTAATCAAGCTTCTGGAAGAAGCGATGTCTGCTCAGTTGTCTGAATTCTCTTCTTGCTCTCAAGAAATTCGAGCTGATAAAATGCGACAAAGGAAGTGCACTGTGTTCCCCTTCCACCCTTGGGATTCCAAAGAGGAGAGAAAGCAGGGAGTTGTATTATGGATTCCGAAGACCATTGAAGAGCTCATCGAGACAGCCATGGATCAGTTAAAATGTTCTAGTGGCTCCTGCATTTTATCTGAAAATGGAGCTAAAATTACTAACATTGACATGATCAGCGATGAAGAGAAGCTATTTTTGGTTGCTGAGACAATATAG 1767 0.4063 MPASQEGYTWIGSLTMGDYSYSHFRDIDLWKRYFTSLYFAIVTMATVGSGDIHAVNVREMLFVMAYVSFDMILGAYLLGNMTALIVKGSKTEKFRDRMAELISYMNRNKLGRQISNEIKHHVRSQHETSYTEAAFLQDIPVSIRAKISQKLYGPYIKEVSLFKGCSSGFLKQIATRVHEEIFLPGEVILEEENMVDQLYIVCNGKLKRVGSNEDEIEGPLMHLQTNDSFGEIPLLCNTPLAYTVQVVELCRLVRLDKQSFINILEIYFSDGQIILNNLLEGKGSNLRNKILESDITLYIGKHEAEVAMRVNCAAYNGDLYQLRRLIEAGADPNKTDYDGRSPLHFAASKGYEDITDFLIELRVNIHLSDNHGNTPLLEAIKNGHDGVTSLLVKAGALLTVEDAGGCLCMTVVRRDLNFLKRLLANGINPNAKNYDSRTPLHLAASEGLYSMTNLLLEAGASVLAKDRWGNTPLDEARIGGNKNLIKLLEEAMSAQLSEFSSCSQEIRADKMRQRKCTVFPFHPWDSKEERKQGVVLWIPKTIEELIETAMDQLKCSSGSCILSENGAKITNIDMISDEEKLFLVAETI* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0567 588 Pfam Ankyrin repeats (3 copies) 313 401 IPR002110 GO:0005515
Vvi11g0567 588 SUPERFAMILY Ankyrin repeat 295 490 IPR036770 -
Vvi11g0567 588 ProSiteProfiles Ankyrin repeat region circular profile. 371 402 - -
Vvi11g0567 588 ProSiteProfiles Ankyrin repeat region circular profile. 435 467 - -
Vvi11g0567 588 Pfam Ion channel 30 85 IPR013099 -
Vvi11g0567 588 Pfam KHA, dimerisation domain of potassium ion channel 514 583 IPR021789 -
Vvi11g0567 588 ProSiteProfiles KHA domain profile. 515 588 IPR021789 -
Vvi11g0567 588 Gene3D - 401 507 IPR036770 -
Vvi11g0567 588 SMART ANK_2a 435 464 IPR002110 GO:0005515
Vvi11g0567 588 SMART ANK_2a 402 431 IPR002110 GO:0005515
Vvi11g0567 588 SMART ANK_2a 338 367 IPR002110 GO:0005515
Vvi11g0567 588 SMART ANK_2a 371 400 IPR002110 GO:0005515
Vvi11g0567 588 SMART ANK_2a 305 334 IPR002110 GO:0005515
Vvi11g0567 588 SMART ANK_2a 468 498 IPR002110 GO:0005515
Vvi11g0567 588 Pfam Cyclic nucleotide-binding domain 182 265 IPR000595 -
Vvi11g0567 588 Gene3D - 301 400 IPR036770 -
Vvi11g0567 588 PRINTS Ankyrin repeat signature 339 354 IPR002110 GO:0005515
Vvi11g0567 588 PRINTS Ankyrin repeat signature 451 465 IPR002110 GO:0005515
Vvi11g0567 588 SMART cnmp_10 161 279 IPR000595 -
Vvi11g0567 588 ProSiteProfiles Ankyrin repeat profile. 338 370 IPR002110 GO:0005515
Vvi11g0567 588 ProSiteProfiles Ankyrin repeat profile. 371 403 IPR002110 GO:0005515
Vvi11g0567 588 FunFam Potassium channel KAT2 149 285 - -
Vvi11g0567 588 SUPERFAMILY Voltage-gated potassium channels 26 86 - -
Vvi11g0567 588 SUPERFAMILY cAMP-binding domain-like 89 279 IPR018490 -
Vvi11g0567 588 ProSiteProfiles Ankyrin repeat profile. 435 467 IPR002110 GO:0005515
Vvi11g0567 588 PANTHER POTASSIUM CHANNEL AKT1 4 584 IPR045319 GO:0005249|GO:0006813
Vvi11g0567 588 Gene3D - 8 87 - -
Vvi11g0567 588 CDD CAP_ED 161 275 IPR000595 -
Vvi11g0567 588 Gene3D Jelly Rolls 131 296 IPR014710 -
Vvi11g0567 588 ProSiteProfiles cAMP/cGMP binding motif profile. 161 264 IPR000595 -
Vvi11g0567 588 ProSiteProfiles Ankyrin repeat region circular profile. 338 370 - -
Vvi11g0567 588 Pfam Ankyrin repeats (many copies) 422 476 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0567 Vvi-Chr11 5309195 5323840 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0567 415 498 Ion Channels AT5G37500 33.645 4.16e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0567 K21867 - vvi:100257630 1170.99