Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0558 ATGGAGAAGAATTGTGGGTGCTGGGCTGTTCTTAAACGCGGTGTTAGAGGTTCCTGCAAGTCCTCTGCTTCTAGGGATTCTGTTAACACTATTCCTCGGACCAGTCTCGTTTATGATGCTGCCACTGAGACGCGATATCTAAACGCAAGTAACCGGGAGCTCTATGCTCCGAATGAAGCTCAGCTCTCTTCCGATAATCCCAATCCATCAGCAACTGAAAACAAAGATGTGTGCCAGCTGCTACAATTTACTTTCCAGGAGCTAAAGTCTGCAACAGGAAACTTCAGGCCGGATAGTATTCTTGGGGAAGGTGGATTTGGATATGTCTTCAAAGGATGGATAGAGGAGAATGGGACAGCACCTGCAAAACCTGGGTCAGGGATTACAGTGGCTGTCAAAAGTTTGAAGCCAGATGGTCTTCAAGGCCATAGAGAATGGGTGGCTGAGGTAGGCTTCCTTGGACAGCTTCACCACCCTAATCTTGTTAAACTTATTGGGTACTGCATTGAAGATGATCAGCGACTGCTTGTTTATGAATTTATGACCCGTGGAAGCCTTGAAAATCACCTTTTCAGAAGGACCATACCTCTTCCATGGTCCAACAGGATTAAGATTGCACTTGGTGCAGCAAAAGGGCTGGCCTTTCTCCACGAGGGTCCTGAACCTGTTATTTACAGGGACTTCAAGACGTCCAACATTTTACTTGATTCGGAATATAATGCAAAGCTTTCAGATTTCGGTCTGGCAAAAGCTGGCCCTCAGGAAGGTGACACACATGTTTCAACAAGGGTTGTTGGAACATATGGCTATGCTGCTCCCGAATATGTGAGGACAGGACACTTGACATCTAAGAGCGATGTTTACAGCTTTGGGGTTGTGCTACTTGAGATTTTAACTGGTAGAAGATCAATGGACAAGAAACGCCCTCGCGGAGAACAGAATCTTGTTGCATGGGCTAGGCCTTATTTGGCTGACAAGCGAAAGCTTTACCAAATAGTTGATCCCCGCCTGGAACTGAATTACTCCCTTAAAGGGGTGCAGAAAGTCTCTCAGTTAGCTTACAACTGCCTCAGTGCGGACCCCAAATCCCGCCCTTGCATGGATGAAGTTGTAAAGGTTCTCACTCCGTTGCAAGACCTCAACGACCTTGCCATCCTATCTTATCACTCCCGCTTATCTCAGCAAGGGCGACGCAAGAAGAAACCGGATGGAACTCCACAGGTCACCTACAACCAGTCCAAAAGCATGAGAGGCTCTCCATTGAACACTGGTAAGCAGCATTGTAGATAA 1290 0.4698 MEKNCGCWAVLKRGVRGSCKSSASRDSVNTIPRTSLVYDAATETRYLNASNRELYAPNEAQLSSDNPNPSATENKDVCQLLQFTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVGFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRRTIPLPWSNRIKIALGAAKGLAFLHEGPEPVIYRDFKTSNILLDSEYNAKLSDFGLAKAGPQEGDTHVSTRVVGTYGYAAPEYVRTGHLTSKSDVYSFGVVLLEILTGRRSMDKKRPRGEQNLVAWARPYLADKRKLYQIVDPRLELNYSLKGVQKVSQLAYNCLSADPKSRPCMDEVVKVLTPLQDLNDLAILSYHSRLSQQGRRKKKPDGTPQVTYNQSKSMRGSPLNTGKQHCR* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0558 429 Gene3D Phosphorylase Kinase; domain 1 70 180 - -
Vvi11g0558 429 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672|GO:0006468
Vvi11g0558 429 CDD STKc_IRAK 101 377 - -
Vvi11g0558 429 MobiDBLite consensus disorder prediction 405 429 - -
Vvi11g0558 429 FunFam Serine/threonine-protein kinase BIK1 62 180 - -
Vvi11g0558 429 ProSiteProfiles Protein kinase domain profile. 95 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0558 429 MobiDBLite consensus disorder prediction 391 429 - -
Vvi11g0558 429 ProSitePatterns Protein kinases ATP-binding region signature. 101 133 IPR017441 GO:0005524
Vvi11g0558 429 Pfam Protein tyrosine and serine/threonine kinase 99 374 IPR001245 GO:0004672|GO:0006468
Vvi11g0558 429 PANTHER OS01G0588500 PROTEIN-RELATED 73 378 - -
Vvi11g0558 429 SUPERFAMILY Protein kinase-like (PK-like) 78 381 IPR011009 -
Vvi11g0558 429 FunFam Probable serine/threonine-protein kinase PBL8 181 395 - -
Vvi11g0558 429 Gene3D Transferase(Phosphotransferase) domain 1 181 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0558 Vvi-Chr11 5211131 5215412 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0558 68 374 Glycoside Hydrolase AT3G07070 53.185 1.70e-109 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vvi11g0558 PK_Tyr_Ser-Thr 1.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0558 - - vvi:100256105 874.004