Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0552 ATGGAGGAGACTGGAGGACTTGTGCCCAAGCCAAGCGTGAAGAAAGGCTTGTGGAAACCGGAAGAGGACTTGCTTTTGAAAAAATATGTGGAGGCTCATGGAGAAGGGAAATGGGCTACTGTTTCTGAAAGATCAGGATTGAAGAGGGGTGGGAAGAGTTGCAGGCTGAGATGGAAGAATTATCTGAGACCCAACATAAAACGTGGAGAGATTTCCAAAGAGGAAGAAGATCTAATTATCCGGATGCATAAGCTTCTCGGAAACCGATGGTCTCTGATCGCGGGTCGCCTCCCAGGTCGAACTGATAATGAGGTGAAGAACTATTGGAATACCCATTTGAACAAGGGACGGTCCCGAGGCAAAAGAAAGAGCCCCAGCAGCGATGATGACGCTGGAAACAAGAGACACCGAGGATTGCCAAATTCTCAGCCTGTCTGCGACGGAAGTCCAGAGAAGAGCAGTGAAGGATCCGAGGGAAGGAAAGAAGAGGAGTCTCATAATATTCTTGATAATAATCCCAGGATGGAAGATACAAAGAGCCTCAACCATGACATAAAATCTCCATTGCCGCCAAGTGTGGAGGACACAGCATTCTTATTTTATGCTGAACCCTTCATATCCTTCCCAGATCCCTTTGTTCTATTTGAAACATTGGGGGAGATGGAGTGGTGA 672 0.4702 MEETGGLVPKPSVKKGLWKPEEDLLLKKYVEAHGEGKWATVSERSGLKRGGKSCRLRWKNYLRPNIKRGEISKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKGRSRGKRKSPSSDDDAGNKRHRGLPNSQPVCDGSPEKSSEGSEGRKEEESHNILDNNPRMEDTKSLNHDIKSPLPPSVEDTAFLFYAEPFISFPDPFVLFETLGEMEW* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0552 223 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Vvi11g0552 223 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Vvi11g0552 223 Gene3D - 70 139 - -
Vvi11g0552 223 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Vvi11g0552 223 FunFam MYB-related transcription factor 14 67 - -
Vvi11g0552 223 CDD SANT 18 62 IPR001005 -
Vvi11g0552 223 SMART sant 67 115 IPR001005 -
Vvi11g0552 223 SMART sant 14 64 IPR001005 -
Vvi11g0552 223 Gene3D - 8 68 - -
Vvi11g0552 223 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 10 165 - -
Vvi11g0552 223 CDD SANT 72 113 IPR001005 -
Vvi11g0552 223 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vvi11g0552 223 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Vvi11g0552 223 MobiDBLite consensus disorder prediction 153 183 - -
Vvi11g0552 223 MobiDBLite consensus disorder prediction 110 189 - -
Vvi11g0552 223 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Vvi11g0552 223 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 66 IPR017930 -
Vvi11g0552 223 MobiDBLite consensus disorder prediction 121 136 - -
Vvi11g0552 223 FunFam Transcription factor TT2 71 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0552 Vvi-Chr11 5121267 5122148 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0552 10 215 MYB Transcription Factor Family AT5G52600 55.660 1.41e-67 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi11g0552 Myb_DNA-binding 2.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0552 K09422 - vvi:100244125 447.588