Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0551 ATGCATAAGCTTCTGGGAAACCGATGGTCTCTGATCGCGGGTCGCCTCCCAGGTCGAACGGATAATGACGTGAAGAACTATTGGAACACCCGTTTGAACAAGGGACGGTCCGGAGGCAAAAGAAAGAGCCCCAGCAGTGATGATAACGCTGGGCACAAGAGACGCCGAGGATTGCCAAATTCTCGGCCCAACTGCGACGGAAGTCCAGAGAAGAGCAGTGAAGGATCTGATGGAAGGAAGCAAGAGGCGTCTCATAATATTCCTGACAATAATCCTAGGATGGAAGATACAAAGAGCTTCAACCATGACATAAAATCTCCATGGCTGCCAATTGTCGAGGACAAAGCATTCTTATTTTATGTTGAACCCTTCATATCTTTCTCAGATGCCTTTGTTTTATTTGAAACATTGGGAGAGATAGAATGTTGA 429 0.4639 MHKLLGNRWSLIAGRLPGRTDNDVKNYWNTRLNKGRSGGKRKSPSSDDNAGHKRRRGLPNSRPNCDGSPEKSSEGSDGRKQEASHNIPDNNPRMEDTKSFNHDIKSPWLPIVEDKAFLFYVEPFISFSDAFVLFETLGEIEC* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0551 142 MobiDBLite consensus disorder prediction 72 101 - -
Vvi11g0551 142 MobiDBLite consensus disorder prediction 1 101 - -
Vvi11g0551 142 ProSiteProfiles Myb-like domain profile. 1 32 IPR001005 -
Vvi11g0551 142 CDD SANT 1 32 IPR001005 -
Vvi11g0551 142 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 36 IPR017930 -
Vvi11g0551 142 Gene3D - 1 59 - -
Vvi11g0551 142 Pfam Myb-like DNA-binding domain 2 31 IPR001005 -
Vvi11g0551 142 MobiDBLite consensus disorder prediction 40 55 - -
Vvi11g0551 142 SUPERFAMILY Homeodomain-like 2 35 IPR009057 -
Vvi11g0551 142 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0551 Vvi-Chr11 5107310 5107848 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0551 1 134 MYB Transcription Factor Family AT5G52600 41.727 3.57e-22 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vvi11g0551 Myb_DNA-binding 6.9e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0551 K09422 - vvi:100854710 288.5