Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0550 ATGGAGCTTCAACTTGGCCTCGCTCTTCCAACCTCACCCGTCAATGACTTCGATCTTAACTGCCATGTCTCCGACCCCACGGAGGCGGCTTCTTCAGACCTTTGCGGCCGTGGAGATGATATGATCAGCGGCAGGAGCAACAAAAAACGTGGGTTCATTGAAGCCTTTGAGCTCCCACCTCAGACGTTGCCTCTTCTTCTTTGGAACGATCACCCGAACGACGACGACGACGATGATGATCGTAAAGGAGTGGAGAACAGCTCCTTCATTGCTAAAAAAAATGATGATGGATATTGTATTGTGGGTTGGCCGCCGATCAAATTCCGGAGGAAGAAGATTTGTTCCCACAACAGAGACGACAATGACCGGACAGTACTGCATAATGGCAGCGCCAGAGCCGGCGTCGGCGGCGGTGTAAACCCCAACTCTAAGTACGTGAAAGTGAAGATGGTGGGAGTGGGAATAGCTAGGAAGATTGACTTGAGCCGCCATCACTCGTACCAAACGCTCACAAACACCTTGATCAACATGTTTGGCAAGTGCCAACAAGATGCACAGAGCTTTAAACTCGCCTATCAGGATAGAGAAGGAGACTGGCTGCTTGCAGGAGATGTGCCCTGGAGAACATTCATTCAGTCGGTGGAGCGTCTGAAAATACTAAGGATTGGCGGTTAA 675 0.5037 MELQLGLALPTSPVNDFDLNCHVSDPTEAASSDLCGRGDDMISGRSNKKRGFIEAFELPPQTLPLLLWNDHPNDDDDDDDRKGVENSSFIAKKNDDGYCIVGWPPIKFRRKKICSHNRDDNDRTVLHNGSARAGVGGGVNPNSKYVKVKMVGVGIARKIDLSRHHSYQTLTNTLINMFGKCQQDAQSFKLAYQDREGDWLLAGDVPWRTFIQSVERLKILRIGG* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0550 224 Pfam AUX/IAA family 186 221 IPR033389 -
Vvi11g0550 224 Pfam AUX/IAA family 39 181 IPR033389 -
Vvi11g0550 224 Gene3D - 138 223 - -
Vvi11g0550 224 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 4 221 IPR003311 GO:0005634|GO:0006355
Vvi11g0550 224 SUPERFAMILY CAD & PB1 domains 141 219 - -
Vvi11g0550 224 ProSiteProfiles PB1 domain profile. 143 224 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0550 Vvi-Chr11 5096181 5097448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0550 136 220 B3 DNA Binding Superfamily AT1G19220 39.362 5.51e-11 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vvi11g0550 AUX_IAA 6e-19 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0550 K14484 - vvi:100266398 437.958