Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0545 ATGTCGAGCTGCATCGATGTTGCGTCTGAGCAACTCTGCTACATCCCTTGCAACTTTTGCAATATTGTTCTCGCGGTGAGTGTTCCATGCAGCAGCTTGTTTGACATCGTGACCGTCCGATGCGGACACTGCACCAATCTATGGTCCGTGAATATGGCAGCTGCATTTCAATCACTGTCATGGCAAGATGTTCAGGCACCCAACTACACTTCTCCAGATTACAGGATTGACTTGGGTTCCTCTTCCAAATGCAACACCAAGATGGCCATGCGAGCACCAGCCTCGAATATCTCTGAGGAAAGGATTGTGAATCGCCCTCCCGAGAAGAGGCAGCGAGTACCTTCTGCTTACAATCAGTTCATAAAAGAGGAGATTCAGAGGATCAAAGCCAATAATCCAGATATCAGCCACAGGGAAGCATTCAGTACTGCTGCAAAAAATTGGGCGCACTTCCCCCATATCCATTTCGGTTTGATGTTAGAAACCAACAATCAACCAAAACTGGACGAGGGCTCTGAGAAGCACCTAATGTCAAAGGCTGCACTACGGAACAAATGA 558 0.4767 MSSCIDVASEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDVQAPNYTSPDYRIDLGSSSKCNTKMAMRAPASNISEERIVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLETNNQPKLDEGSEKHLMSKAALRNK* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0545 185 CDD HMG-box_SF 112 148 - -
Vvi11g0545 185 Pfam YABBY protein 8 158 IPR006780 GO:0007275
Vvi11g0545 185 FunFam Axial regulator YABBY 103 173 - -
Vvi11g0545 185 Gene3D High mobility group box domain 96 154 IPR036910 -
Vvi11g0545 185 PANTHER PROTEIN YABBY 6-RELATED 1 167 IPR006780 GO:0007275
Vvi11g0545 185 SUPERFAMILY HMG-box 103 151 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0545 Vvi-Chr11 5014314 5017431 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0545 7 168 C2C2-YABBY Transcription Factor Family AT2G26580 79.012 4.33e-94 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Vvi11g0545 YABBY 9.8e-70 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0545 K25796 - vvi:100254328 384.415