Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0530 ATGTGTCACATAAGAGTTTGTTCATGGTACAGGGAGTTGCATTTGCTACAAAACATCCTTTCTCTGCAGGTGAACTCATACACTGTATGCAGGATGGAAATGTTGGGTTTCTTCCAATTTTTTGGGTTCATGAGTTTGTCACTTGTTCTCCTGTCTGAAATCTCTGTTGCCAGTCATTTTATTGGTAGAATTTACCCAGGTTTTCAAGCAGCTCAGATTAATTGGATTGATAATAATGGAATGTTTTTGTTCTCTAACAACTCGAATTTTGCTTTTGGATTCTCTTCTACAAAGAACCCCTCTTTGTTTCTGTTGAATGTTGTGTATGTGGGCAGTTCAAGAATTGTCTGGACTGCTAACAGAGGCTCTGCTGTTGGAATTTATGACAAATTTGTTTTCAACAAAACTGGGAATGTGCACTTGGAGACACAGGAAGGTATAATCTGGGAAGCCCTTACTGCTGGAAAAGGAGTCTATGCTATGGAGTTGCAAGACTCGGGCAATTTGGTTTTGCTTGGTAATGATTCTAATGACAGTAAGCCTGTCTGGCAAAGTTTTAGCTATCCCACAGACACCCTTTTATCAAATCAAGTGTTCATGGAAGGAATGAGACTTGCAAGTGATCCTAACCCCAATAACTTGACCTTCTACCTTGAAATGAAGTGGGGAGACATGATTCTATATGCAGGATATCAAACTCGTCAAACCTATTGGTCTATGGCCAACGAGGTCCGGAAAATCATTAACAAAAATACTGGGGTAGTTGCCTTGGCTTCACTAACTTCCAATTCATGGAAATTCTTCACTCAAAACCAGACTCTAGTTTGGCAATTTATATTAAGAGACAATCTTGATCCCAATACAACTTGGGCTGCAGTTCTAGGGTCTGATGGGATTATCTCATTCTACAATCTTCAGAAAAAGCTATCTGCTGTTACTGGGATACCAGAATACCGGTGCAGCACACCTGAGCCTTGTGATCCTTATAATATTTGTTATGCTGACAACAGCTGCAAATGCCTTCCAGTTCTTAGTTCTCAGCAAGATTGTAAACCAGGGATCACCTCTCCTTGTGATGGCTCAAGAAGTTCTGTGGAGCTTGTAAATTCTGGGGATGCATTCAACTATTTTGCTCTTGGGTTTGTTCCTCCCACTTTCAAATCAACTCTGGGCCATTGTCAAGAAGTTTGCCTCGGTAACTGTTCATGCATGGTCTTATTCTTTGAAAACAATTCAGGGAATTGCTTTCTGTTCAACCAGATAGGGAGCTTGCAGCAGCGCAACAAACAGGGTTCCTCAGAATTTGTTTCATACATTAAAATCTCTAGCGGTGAAGAAAGCAGAGGTCAGAACACTCAGAATCACTGGGTGCTTGTTTCACTTGTAGCAGCTACTACTTCGTTGGTTGTTGTAGGTTTACTTTGTTTGGGGCTCTGGTGTAGCCAGAAAAAGAAAAGGCTGCTGGGGTCTCCACAAAATTTCTCTAGGGAGGGTAATTTTTCTTCCAAATATGCCTCAGAAGAGGATGATCTATTTGAGAATATGTCTTGGTGGCTAGTCCCCTTCAGTTACAAAGATCTTCAAACTGCGACTAACAACTTCTCGGTAAAACTTGGTCAGGGTGGGTTTGGTTCAGTCTACAAAGGAGTACTCCCAGATGGAACTGCCATTGCAGTGAAGATGCTGGAGGGAATTGGTCAGGGTAAGAAAGAATTTCAGTCTGAAGTAACCACCATAGGTAGAATCCACCATATCCACTTGGTCAGGCTCAAAGGCTTCTGTACTGAGGGGTCTCACCGGCTTCTTGTTTATGAGTACATGGCAAAAGGGTCTCTGGACAGATGCTTTAAGAACAATGGAGAAGGTTTAGTTTTGGACTGGGAGACAAGGTTCAATATAGCTTTGGGTACAGCAAAGGGACTGGCTTATCTCCATGATGGCTGCAGTGTAAAGATAGTTCACTGTGATATAAAACCAGAAAATGTGCTTCTTGATGACAATTACCAAGCCAAGGTTTCGGATTTCGGTTTGGCAAAGTTGATGACAAGGGAACAGAGCCGTGTGGTGACAACAATAAGGGGTACTAGGGGGTACTTGGCACCTGAGTGGGTCACGGACTACGCCATATCAGAGAAGAGTGATGTATATAGCTTTGGCATGGTTTTGCTTGAAATCATCGGAGGAAGGAGAAACTTCGATCCTGAGGAAAATTCAGAGAAGGCCTATTTCCCCTCTTTTGCCCTCAAGATGATGGAAGAAGGGAAACCAGAAAAAATAGTTGACTCAAAGCTCAAGATTGAGGAAGATGATGAGAGGGTTTATACTGCAATAAAAGTTGCTTTGTGGTGTATACAGGGGAATATGTCCCAAAGGCCATCAATGGCCAAAGTGGTTCAAATGCTTGAAGGTAGCTGTGTTGTACCTCAGCCTCCAAGTTATTCTCAAATGGGTTCCCACTTTTTCGACAATTTCGTTAGGCCAGTCAAGAAGTTGGGTACTTTTTCCGAATCACCTTGTTGTCATATTGATGCATCCCTTTCATCTACGCAGCTATCTGGTCCAAGATAA 2568 0.4225 MCHIRVCSWYRELHLLQNILSLQVNSYTVCRMEMLGFFQFFGFMSLSLVLLSEISVASHFIGRIYPGFQAAQINWIDNNGMFLFSNNSNFAFGFSSTKNPSLFLLNVVYVGSSRIVWTANRGSAVGIYDKFVFNKTGNVHLETQEGIIWEALTAGKGVYAMELQDSGNLVLLGNDSNDSKPVWQSFSYPTDTLLSNQVFMEGMRLASDPNPNNLTFYLEMKWGDMILYAGYQTRQTYWSMANEVRKIINKNTGVVALASLTSNSWKFFTQNQTLVWQFILRDNLDPNTTWAAVLGSDGIISFYNLQKKLSAVTGIPEYRCSTPEPCDPYNICYADNSCKCLPVLSSQQDCKPGITSPCDGSRSSVELVNSGDAFNYFALGFVPPTFKSTLGHCQEVCLGNCSCMVLFFENNSGNCFLFNQIGSLQQRNKQGSSEFVSYIKISSGEESRGQNTQNHWVLVSLVAATTSLVVVGLLCLGLWCSQKKKRLLGSPQNFSREGNFSSKYASEEDDLFENMSWWLVPFSYKDLQTATNNFSVKLGQGGFGSVYKGVLPDGTAIAVKMLEGIGQGKKEFQSEVTTIGRIHHIHLVRLKGFCTEGSHRLLVYEYMAKGSLDRCFKNNGEGLVLDWETRFNIALGTAKGLAYLHDGCSVKIVHCDIKPENVLLDDNYQAKVSDFGLAKLMTREQSRVVTTIRGTRGYLAPEWVTDYAISEKSDVYSFGMVLLEIIGGRRNFDPEENSEKAYFPSFALKMMEEGKPEKIVDSKLKIEEDDERVYTAIKVALWCIQGNMSQRPSMAKVVQMLEGSCVVPQPPSYSQMGSHFFDNFVRPVKKLGTFSESPCCHIDASLSSTQLSGPR* 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0530 855 FunFam serine/threonine-protein kinase PBS1-like 500 606 - -
Vvi11g0530 855 CDD STKc_IRAK 538 803 - -
Vvi11g0530 855 PIRSF SRK 37 844 IPR024171 GO:0004674
Vvi11g0530 855 ProSitePatterns Protein kinases ATP-binding region signature. 538 560 IPR017441 GO:0005524
Vvi11g0530 855 SMART serkin_6 532 801 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0530 855 FunFam S-receptor-like kinase 5 607 810 - -
Vvi11g0530 855 Gene3D - 76 188 IPR036426 -
Vvi11g0530 855 SUPERFAMILY alpha-D-mannose-specific plant lectins 106 240 IPR036426 -
Vvi11g0530 855 Gene3D Transferase(Phosphotransferase) domain 1 607 807 - -
Vvi11g0530 855 ProSiteProfiles PAN/Apple domain profile. 358 443 IPR003609 -
Vvi11g0530 855 SMART blect_4 74 189 IPR001480 -
Vvi11g0530 855 SUPERFAMILY Protein kinase-like (PK-like) 514 802 IPR011009 -
Vvi11g0530 855 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 75 813 - -
Vvi11g0530 855 CDD B_lectin 76 189 IPR001480 -
Vvi11g0530 855 ProSitePatterns Serine/Threonine protein kinases active-site signature. 652 664 IPR008271 GO:0004672|GO:0006468
Vvi11g0530 855 ProSiteProfiles Bulb-type lectin domain profile. 68 184 IPR001480 -
Vvi11g0530 855 Gene3D Phosphorylase Kinase; domain 1 496 606 - -
Vvi11g0530 855 Pfam Protein kinase domain 536 799 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0530 855 Pfam D-mannose binding lectin 115 197 IPR001480 -
Vvi11g0530 855 FunFam Serine/threonine-protein kinase 70 187 - -
Vvi11g0530 855 ProSiteProfiles Protein kinase domain profile. 532 821 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0530 Vvi-Chr11 4815572 4818139 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0530 461 811 Receptor kinase-like Gene Family AT5G20050 43.514 1.20e-85 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi11g0530 Pkinase 4.5e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0530 - - vvi:100249150 1702.95