Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0528 ATGAAAAAGGTCACGAGAAAGGTCGGAAAGTATGAGGTCGGCCGAACAATTGGCGAAGGAACTTTCGCCAAGGTTAAATTTGCGCACAACACCGAGACTGGGGAGAGCGTAGCTATGAAGGTTATGGCAAAGTCCACCATTCTTAAGCATAGGATGGTCGATCAGATTAAACAAGAGATATCCATAATGAAGATTGTCAGGCACCCTAACATAGTTAGATTGCATGAGGTCTTGGCCAGCCAGACAACGATATATATTATTCTTGAGTTTGTCACTGGAGGAGAACTATATGATAAAATTGTTCACCAAGGAAGACTCTCTGAAAATGAATCCAGGCGATACTTTCAGCAGCTTATAGATGCTGTATCACATTGTCACAGTAAGGGTGTGTACCACAGAGATCTGAAGCCTGAAAATCTACTTCTTGATTCGAATGGAAATTTGAAGGTTTCTGATTTTGGACTTAGTGCATTGCCTAAACAAGGGGTTGGACTTCTTCATACCACATGTGGAACCCCAAATTATGTTGCACCTGAGGTGCTTAGTAACCAAGGTTATGACGGTGCAGCTGCTGATGTGTGGTCATGTGGAGTCATTCTCTATGTTCTAATGGCAGGATATCTTCCATTTAATGAGATAGACCTTCCAAGCTTGTACAAAAAGCGTATTCGGATTGAAGGGATAAAAAATGATCCATGGTTTCGAAAGAACTACGTGTCTAGCAAATGTAGAGAAGATGAAGAAGTGAATTTGGATGATATTCATGCGGTTTTTGATGATATTGAGGAAAATTACGTATCTGAGCAGTCAGGAAATAATGACACAGGTCCTTTGATAATGAATGCATTTGAGATGATTACCCTATCCCAAGGGTTGAATCTATCAGCACTTTTTGACAGACGACAGGATTATGTAAAACGGCAAACTCGTTTTGTTTCCCGCGAACCAGCAAAAGTTATAATTTCTACTATTGAAGCTGTGGCAGAATCTATGAATTTCAAGGTCCATACACGCCACTACAAGACAAGACTCGAGGGAATATCTGCAAATAAGACTGCACAATTTGCAGTTGTCCTAGAGGTTTTTGAAGTTGCACCATCCCTTTTCATGGTGGATGTTAGAAAGGCTGCTGGGGATACACTTGAATATCACAAGTTTTACAAGAATTTCTGTGCTAAACTTGAGCATATCATCTGGAAACCAAAAGAGGCTATGACAAATTCCAGTCTTCTAAGAACAATGACTTGCTGA 1251 0.4045 MKKVTRKVGKYEVGRTIGEGTFAKVKFAHNTETGESVAMKVMAKSTILKHRMVDQIKQEISIMKIVRHPNIVRLHEVLASQTTIYIILEFVTGGELYDKIVHQGRLSENESRRYFQQLIDAVSHCHSKGVYHRDLKPENLLLDSNGNLKVSDFGLSALPKQGVGLLHTTCGTPNYVAPEVLSNQGYDGAAADVWSCGVILYVLMAGYLPFNEIDLPSLYKKRIRIEGIKNDPWFRKNYVSSKCREDEEVNLDDIHAVFDDIEENYVSEQSGNNDTGPLIMNAFEMITLSQGLNLSALFDRRQDYVKRQTRFVSREPAKVIISTIEAVAESMNFKVHTRHYKTRLEGISANKTAQFAVVLEVFEVAPSLFMVDVRKAAGDTLEYHKFYKNFCAKLEHIIWKPKEAMTNSSLLRTMTC* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0528 416 ProSiteProfiles Protein kinase domain profile. 11 298 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0528 416 ProSitePatterns Protein kinases ATP-binding region signature. 17 49 IPR017441 GO:0005524
Vvi11g0528 416 CDD CIPK_C 281 391 - -
Vvi11g0528 416 SUPERFAMILY Protein kinase-like (PK-like) 8 249 IPR011009 -
Vvi11g0528 416 Gene3D Kinase associated domain 1, KA1 274 400 - -
Vvi11g0528 416 FunFam Non-specific serine/threonine protein kinase 4 221 - -
Vvi11g0528 416 FunFam Non-specific serine/threonine protein kinase 274 400 - -
Vvi11g0528 416 SMART serkin_6 11 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0528 416 Pfam NAF domain 277 336 IPR004041 GO:0007165
Vvi11g0528 416 Gene3D Transferase(Phosphotransferase) domain 1 91 246 - -
Vvi11g0528 416 FunFam Non-specific serine/threonine protein kinase 2 90 - -
Vvi11g0528 416 Pfam Protein kinase domain 11 243 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0528 416 ProSiteProfiles NAF domain profile. 275 299 IPR018451 GO:0007165
Vvi11g0528 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Vvi11g0528 416 Gene3D Phosphorylase Kinase; domain 1 1 90 - -
Vvi11g0528 416 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 8 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0528 Vvi-Chr11 4753625 4787144 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0528 1 341 CBL-interacting serine-threonine protein kinases AT5G35410 71.968 0.0 556
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vvi11g0528 Pkinase 1.5e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0528 - - nnu:104592446 709.523