Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0501 ATGACAGGTGCAGGTGAAGCAGTAAATCCAAAAGCATACCCACTTGCGGATGCGCAACTCACCATAACTATTCTGGATCTCATTCAACAAGCTGCCAACTACAAGCAGCTCAAAAAGGGCGCTAATGAAGCAACCAAAACCCTCAATAGGGGTATCTCTGAGTTCGTAGTTATGGCTGCTGACACGGAGCCCCTTGAAATCCTACTCCATCTTCCTTTGCTTGCTGAGGATAAGAATGTGCCTTATGTATTTGTCCCTTCAAAGCAAGCACTTGGCCGTGCATGTGGAGTCACAAGGCCTGTCATTGCCTGTTCGGTGACTAGCAATGAGGGAAGCCAACTGAAATCTCAAATACAACAACTCAAGGATGCCATTGAGAAGCTCTTGATCTGA 393 0.4656 MTGAGEAVNPKAYPLADAQLTITILDLIQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEGSQLKSQIQQLKDAIEKLLI* 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0501 130 FunFam NHP2-like protein 1 homolog 4 130 - -
Vvi11g0501 130 ProSitePatterns Ribosomal protein L7Ae signature. 75 92 IPR004037 GO:0042254|GO:1990904
Vvi11g0501 130 CDD SNU13 9 130 - -
Vvi11g0501 130 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 5 127 - -
Vvi11g0501 130 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 25 113 IPR004038 -
Vvi11g0501 130 PRINTS Ribosomal protein L7A/RS6 family signature 82 96 IPR018492 -
Vvi11g0501 130 PRINTS Ribosomal protein L7A/RS6 family signature 72 82 IPR018492 -
Vvi11g0501 130 PRINTS Ribosomal protein L7A/RS6 family signature 56 69 IPR018492 -
Vvi11g0501 130 PRINTS Ribosomal protein L7A/RS6 family signature 37 51 IPR018492 -
Vvi11g0501 130 Gene3D - 2 130 IPR029064 -
Vvi11g0501 130 PRINTS High mobility group-like nuclear protein signature 84 96 IPR002415 GO:0003723|GO:0005730
Vvi11g0501 130 PRINTS High mobility group-like nuclear protein signature 40 50 IPR002415 GO:0003723|GO:0005730
Vvi11g0501 130 PRINTS High mobility group-like nuclear protein signature 10 23 IPR002415 GO:0003723|GO:0005730
Vvi11g0501 130 PRINTS High mobility group-like nuclear protein signature 23 38 IPR002415 GO:0003723|GO:0005730
Vvi11g0501 130 SUPERFAMILY L30e-like 8 128 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0501 Vvi-Chr11 4421318 4423542 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0501 37 92 Cytoplasmic Ribosomal Protein Gene Family AT2G47610 35.714 4.71e-06 42.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0501 K12845 - vvi:100252442 242.662