Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0499 ATGGACGGGAACAAAGATGAGGCCTTGAAATGCCTGAAAATTGGGAAAGATGCGTTGGAGGCAGGGGATCGAGCCCGTGCCTTGAAATTCGTTACGAAAGCGCGTCGTCTTGATCCGAACCTTCCTGTTGACGATCTCTTATCGGCGATTGAACGAGAAACGGGTCAATCGGAGACGCCGGCCGGTGGGGCTAATGATGAGGCTTCGAAGGCCTCCGATCATCCTTCGGTTCGACATAGGGTTCCATCGAGTGGGTCTTCAGCGTCTTCGTCTTCATCATCGGTGGCGTACACGGAGGAACAGATCTCAATTGTGAGGCAGGTTAAGAAGAAGAAAGATTACTATGAGGTTCTAGGGTTGGAGAAGAGTTGTACTGTTGAGGATATTCGCAAGGCTTATCGGAAACTGTCTTTGAAGGTTCATCCTGATAAGAACAAGGCTCCGGGTGCAGAGGAGGCTTTTAAGGCAGTGTCTAAAGCGTTTCAGTGTTTGAGCAACGAAGAGAGCCGGAAAAAGTACGATCTTGTTGGGTCGGATGAACCAGTTTACGAGCGGCATCCAGCGACTCGCAGGGCAAACGGTTTCAATGGGTTCTATGATGGCGATGTTGATGCAGAAGAGATCTTTAGGAACTTCTTCTTCGGTGGAATGCCTCAAGCAACCACCCAGTTTCGGGGGTTCGCATTCGGGCCTGGAATGGGAACGAGAACGGGTAATAATGACTCTGGTGGATTTAACATCAGGGCACTTATTCAATTACTTCCAGTGCTTATTATTCTGCTTTTGAACTTTTTGCCATCATCAGAGCCAATGTATGCATTCGCTAGATCTTACCCATATGAATACCGGTTTGTCACACAAAAGGGAGTGAATTATTATGTGAAGTCAACCAAATTTGAGCAAGATTACCCTTCAAATAGCCATGAACGAGTGGCTTTTGAGGCACGGGTTGAGAGAGAATACTTTGCACTTCTGTCACAGAATTGTCGGCATGAGTTGCAGCGTCTCCAGTGGGGTTTTATACGGGAAACACCACATTGTGACATGTTAAAACAGTTTGAGGCTGTGGCATAA 1074 0.4739 MDGNKDEALKCLKIGKDALEAGDRARALKFVTKARRLDPNLPVDDLLSAIERETGQSETPAGGANDEASKASDHPSVRHRVPSSGSSASSSSSSVAYTEEQISIVRQVKKKKDYYEVLGLEKSCTVEDIRKAYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNEESRKKYDLVGSDEPVYERHPATRRANGFNGFYDGDVDAEEIFRNFFFGGMPQATTQFRGFAFGPGMGTRTGNNDSGGFNIRALIQLLPVLIILLLNFLPSSEPMYAFARSYPYEYRFVTQKGVNYYVKSTKFEQDYPSNSHERVAFEARVEREYFALLSQNCRHELQRLQWGFIRETPHCDMLKQFEAVA* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0499 357 CDD DnaJ 113 166 IPR001623 -
Vvi11g0499 357 ProSitePatterns Nt-dnaJ domain signature. 154 173 IPR018253 -
Vvi11g0499 357 PANTHER AT29763P-RELATED 1 352 - -
Vvi11g0499 357 Pfam Domain of unknown function (DUF1977) 266 335 IPR015399 -
Vvi11g0499 357 ProSiteProfiles dnaJ domain profile. 113 177 IPR001623 -
Vvi11g0499 357 Gene3D DnaJ domain 109 225 IPR036869 -
Vvi11g0499 357 MobiDBLite consensus disorder prediction 42 93 - -
Vvi11g0499 357 SUPERFAMILY Chaperone J-domain 108 227 IPR036869 -
Vvi11g0499 357 SMART dnaj_3 112 169 IPR001623 -
Vvi11g0499 357 MobiDBLite consensus disorder prediction 79 93 - -
Vvi11g0499 357 Pfam DnaJ domain 113 174 IPR001623 -
Vvi11g0499 357 PRINTS DnaJ domain signature 115 133 IPR001623 -
Vvi11g0499 357 PRINTS DnaJ domain signature 133 148 IPR001623 -
Vvi11g0499 357 PRINTS DnaJ domain signature 149 169 IPR001623 -
Vvi11g0499 357 FunFam Chaperone protein dnaJ 49 109 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0499 Vvi-Chr11 4400199 4401272 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0499 107 174 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 37.500 4.23e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0499 K09518 - vvi:100262992 680.248