Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0496 ATGACAATGTCGTGGGCTGATGTCTCCACTGACACACCCACCAACCCAACTCGCCTTGCTCGCCCCACTCGCCCCACATACGTGCCCCCACATCTCCGGCATGGTGCTGCGGTTGCCACCACCAACGGCGCCACTCCAATCGGTTCCGACTGCCCTCCAGAACAAGGCCGGACTGCTACCAGCCGGGGCCGTGGCCAGAGCCGGGGACGTGGACGTGGGCAAGGATGGGGTCAGGGGAGAGAGGCTTCTGAGGCAAATGCTAGCCCATTCGACGGTTCTGAGAAATTTGATGAATTGGAAGAGGTAGAAGACACTAATGGTGGTTTGAGTATAAATTTCGATGCGTACGAGGACATACCAGTTGAGGCCAGTGGCTCCGATATACCCCCACCTGTCAGTGCATTTGCAGAGATTCATCTGGGTGAGGGTTTGAACCAAAATATCAGAAGGTGCAAGTACGTGAAACCGACGCCGATACAACGCCATGCCATTCCGATTGCAATGGCGGGTCGAGATTTGATGGCCTGTGCCCAGACGGGTTCGGGCAAAACGGCGGCGTTTTGTTTCCCGATCATATGTGGTATTTTGAGGAACCAGTTATCGCGGGGTGGTGCCAGGCTTGCTTGTCCAACTGCTCTTATCCTATCTCCGACGCGGGAATTGTCTTGTCAGATACACGAGGAAGCTAAGAAGTTCTCTTATAAAACCGGTTTGAAGGTGGTAGTAGCTTATGGAGGAGCACCAATATCTCAGCAGTTCCGTAATTTGGAAAGAGGTGTGGACATCTTAGTTGCTACACCTGGTCGCCTTGTGGATATGATTGAGAGAGCAAGAGTTTCTCTTAGAATGATAAAATATTTGGCTTTGGATGAGGCTGATAGAATGTTGGATATGGGCTTTGAGCCTCAGATCAGGAAGATTGTCGAGCAGATGGATATGCCACCACCAGGTGCGAGACAGACAATGCTTTTCAGTGCTACGTTTCCTAATGAGATACAGAGGCTTGCTGCGGATTTTTTATCAAACTACATATTTCTATCTGTAGGACGAGTTGGTTCAAGCACTGATCTTATCGTGCAGAGAGTTGAATTTGTTGAAGATACAGACAAACGTTACCATCTGATGGATCTTCTTCAATCTCAAATGACAAATAGAACCCCCAAAAAGTATGCTTTAACTCTAGTTTTTGTGGAGACGAAGAGAGGAGTAGATGCATTAGAACAGTGGTTGTGCATGAATGGTCTGGCAGCAACAGCAATACATGGTGACAAAGTGCAAATGGAAAGGGAACGGGCCTTGAAATCATTCAAAAGTGGAGCCACTCCGATAATGGTAGCAACTGATGTTGCTGCACGAGGCCTGGATATTCCACATGTAGCACATGTCATCAACTTTGATCTGCCAAAAGCCATAGATGACTATGTTCACAGAATAGGCCGGACAGGTCGTGCCGGTAAATCAGGTCTAGCAACAGCATTTTTCAATGATGGGAACCTTTCCCTTGCAAAATCACTTGTGGAGCTAATGCAGGAATCAAACCAAGAGGTTCCTTCTTGGTTGAACCAATATGCTGAGAGACCATCATATGGTGGTGGTCGGTCCCGATACGGGGGTGGCAGGTTTGGTGGACATGATTTTCGAAGTAGTTCTCAATTGAAAAGGGAAGACTACTACTCTCCAAGTCCATATGGTGATGTGACTCAGACTGACGTTTTTGTTGCCCCTGCTTCTGGTGAAGGTTACTATTCAATCCCTTATGGTGAAGCAGCTCCACCTGACTCTTATGCTGCTGGATCAGACAGATATGGATTTGATCATGGTTCAATTGTGGCAAGTGGTTGGGACTAA 1848 0.4811 MTMSWADVSTDTPTNPTRLARPTRPTYVPPHLRHGAAVATTNGATPIGSDCPPEQGRTATSRGRGQSRGRGRGQGWGQGREASEANASPFDGSEKFDELEEVEDTNGGLSINFDAYEDIPVEASGSDIPPPVSAFAEIHLGEGLNQNIRRCKYVKPTPIQRHAIPIAMAGRDLMACAQTGSGKTAAFCFPIICGILRNQLSRGGARLACPTALILSPTRELSCQIHEEAKKFSYKTGLKVVVAYGGAPISQQFRNLERGVDILVATPGRLVDMIERARVSLRMIKYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGARQTMLFSATFPNEIQRLAADFLSNYIFLSVGRVGSSTDLIVQRVEFVEDTDKRYHLMDLLQSQMTNRTPKKYALTLVFVETKRGVDALEQWLCMNGLAATAIHGDKVQMERERALKSFKSGATPIMVATDVAARGLDIPHVAHVINFDLPKAIDDYVHRIGRTGRAGKSGLATAFFNDGNLSLAKSLVELMQESNQEVPSWLNQYAERPSYGGGRSRYGGGRFGGHDFRSSSQLKREDYYSPSPYGDVTQTDVFVAPASGEGYYSIPYGEAAPPDSYAAGSDRYGFDHGSIVASGWD* 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0496 615 CDD SF2_C_DEAD 358 494 - -
Vvi11g0496 615 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 370 524 IPR001650 -
Vvi11g0496 615 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 211 502 IPR027417 -
Vvi11g0496 615 Pfam DEAD/DEAH box helicase 157 334 IPR011545 GO:0003676|GO:0005524
Vvi11g0496 615 Pfam Helicase conserved C-terminal domain 376 485 IPR001650 -
Vvi11g0496 615 SMART helicmild6 404 485 IPR001650 -
Vvi11g0496 615 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 133 161 IPR014014 GO:0003724
Vvi11g0496 615 FunFam ATP-dependent RNA helicase RhlB 349 528 - -
Vvi11g0496 615 MobiDBLite consensus disorder prediction 1 93 - -
Vvi11g0496 615 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 164 346 IPR014001 -
Vvi11g0496 615 Gene3D - 90 348 IPR027417 -
Vvi11g0496 615 MobiDBLite consensus disorder prediction 1 21 - -
Vvi11g0496 615 CDD DEADc_DDX3_DDX4 135 352 IPR044763 GO:0003724|GO:0005524
Vvi11g0496 615 Gene3D - 349 528 IPR027417 -
Vvi11g0496 615 FunFam Probable ATP-dependent RNA helicase DDX4 96 348 - -
Vvi11g0496 615 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 99 524 - -
Vvi11g0496 615 SMART ultradead3 152 361 IPR014001 -
Vvi11g0496 615 MobiDBLite consensus disorder prediction 42 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0496 Vvi-Chr11 4374686 4379994 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0496 115 517 Eukaryotic Initiation Factors Gene Family AT3G19760 31.514 1.89e-62 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0496 K11594 - vvi:100245822 1175.23