Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0485 ATGGAGGATGAGTTACAGAAGCGCAACACTGATTGCGTCTACTTCTTGGCCTCTCCTCTCACTTGCAAGAAGGGAATGGATTGTGAGTATCGGCACAGTGAGGGTGCAAGGCTCAACCCACGGGATTGTTGGTATTGGTTGAGTGGGAGCTGTCTGAATCCAGCCTGTGCTTTTCGACATCCTCCATTGGATGGGCATATTGAAGCATCATCTGAGCCTGTCACTTTGTCACATCACTCCTCCGTACCCGTGAACAAGACCAATACCCCTTGTTATTTTTACTACAATGGGTTTTGCAATAAAGGCGAAAGATGCTCCTTTTTGCATGGTCCTGACAGTAGTGCACCTGCTTGGAAATCCTTAAAGACAGCGTCTGAGGTCAATGATATGCGCCCTCCAGAAAATAATACAATAGCAGGAACTGAGACAGGGCCAACACTAATAGGAAGACGGCCTAATTCAGTAGAAACTGCCACAGTCACAGCAATTGAAACACAGTTTCAGCCTAAAGAGGATCTTCAGAAATTGGTCTTTAAGAATGCTTTTGAACAAAGTTCATCTCCACAGATATCAATGTCTGAGTATGAAGAAGCTGCAGCAGTCAGGTCAGATTCCTTGCTTCCAGCTGAAGGCTTTAATCAAAGCAGATCTCTTCTAAGCACAGATCAGAGTTCAGAGGAGCAAGTGGATGGCCCCATTGAACCAGAAGAGCGCTGGGAATCATCCCCAGGTTTTGATGTTCTTGTGGATAATATTTCAGAGAATTTGGTTTACGAGGATGAACCTGAGTACTTACTGGCTCTTGAAGGAGAAGGCAGGGAGCTGAACGGTCAATTCTTGGGTTATGATTTTGAAGACCCAGTTGAATATGATCTCATGTACCCAGAAGCTGAAATTTTGTATGACCACAGGATATATGATTCTTTTGATTGTTTGGACAATGAGCATAGTTCTGATCATGTAAGAAATATTCCTGGGTGCTCTAGGGAGAGAATTTTGGATCCTATTTTGCCCCGGAAAAGGAAAAATTTTCCAGTGGAACTAGCAGTAACTGGAAGGAGTGGTCTTGATCTTCGAGACCGACTGAGAAAACGTCGGGTAACTGATGGTCACACGGTTACCCGTTTCTCAAGAAGGCATGATTCATCTTGTCTGATTGGTCGAACCAGAGAAAGGCGTCGAAGGCATGGTATGGACCAGCAGCTGCAAGGAAGATCTGCATCAGAAGTCAGAAAAAACATTATTGGAATGCTCAGTGAGAATGAAACTCTTTCAAATCGTGGGAACAAGCAAGGTTGGGTTAGACGCTCTCGCCTACCCAAGTCTCGGCAGCATTACAAGGAAAAAGGGCACTCCCAAAGGCAGCATATTTCATCTGAAGACTCAAGGAAACCAGTTTCAAGAGAGAGAATATCTACTCGAGAATATACTACATTTACAGGACCTAAGTCCCTTGCCCAGATTAAGGAAGAGAAGAGGAAAGCTGAAGAAAATGGAGAGGGCTTTGGGAAAATGGGATATTCAAGCAATACCCCATCCGCAGATTTCCAGGGTCCCAAACCTTTGAGTGAAATCCTCAAGGACAAAAGAAAGCTGGGTTCAGCGATGGATGGCAATATTATCAGCAGCTAA 1632 0.4455 MEDELQKRNTDCVYFLASPLTCKKGMDCEYRHSEGARLNPRDCWYWLSGSCLNPACAFRHPPLDGHIEASSEPVTLSHHSSVPVNKTNTPCYFYYNGFCNKGERCSFLHGPDSSAPAWKSLKTASEVNDMRPPENNTIAGTETGPTLIGRRPNSVETATVTAIETQFQPKEDLQKLVFKNAFEQSSSPQISMSEYEEAAAVRSDSLLPAEGFNQSRSLLSTDQSSEEQVDGPIEPEERWESSPGFDVLVDNISENLVYEDEPEYLLALEGEGRELNGQFLGYDFEDPVEYDLMYPEAEILYDHRIYDSFDCLDNEHSSDHVRNIPGCSRERILDPILPRKRKNFPVELAVTGRSGLDLRDRLRKRRVTDGHTVTRFSRRHDSSCLIGRTRERRRRHGMDQQLQGRSASEVRKNIIGMLSENETLSNRGNKQGWVRRSRLPKSRQHYKEKGHSQRQHISSEDSRKPVSRERISTREYTTFTGPKSLAQIKEEKRKAEENGEGFGKMGYSSNTPSADFQGPKPLSEILKDKRKLGSAMDGNIISS* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0485 543 Pfam Zinc-finger containing family 6 63 IPR041686 -
Vvi11g0485 543 MobiDBLite consensus disorder prediction 129 152 - -
Vvi11g0485 543 MobiDBLite consensus disorder prediction 126 152 - -
Vvi11g0485 543 ProSiteProfiles Zinc finger C3H1-type profile. 6 35 IPR000571 GO:0046872
Vvi11g0485 543 SUPERFAMILY CCCH zinc finger 85 110 IPR036855 GO:0046872
Vvi11g0485 543 SMART c3hfinal6 39 62 IPR000571 GO:0046872
Vvi11g0485 543 SMART c3hfinal6 86 111 IPR000571 GO:0046872
Vvi11g0485 543 SMART c3hfinal6 7 34 IPR000571 GO:0046872
Vvi11g0485 543 Gene3D - 76 138 - -
Vvi11g0485 543 Gene3D - 2 63 - -
Vvi11g0485 543 MobiDBLite consensus disorder prediction 390 543 - -
Vvi11g0485 543 ProSiteProfiles Zinc finger C3H1-type profile. 37 63 IPR000571 GO:0046872
Vvi11g0485 543 MobiDBLite consensus disorder prediction 486 500 - -
Vvi11g0485 543 MobiDBLite consensus disorder prediction 451 471 - -
Vvi11g0485 543 ProSiteProfiles Zinc finger C3H1-type profile. 85 112 IPR000571 GO:0046872
Vvi11g0485 543 FunFam Zinc finger CCCH domain-containing protein 17 1 63 - -
Vvi11g0485 543 MobiDBLite consensus disorder prediction 434 450 - -
Vvi11g0485 543 MobiDBLite consensus disorder prediction 216 240 - -
Vvi11g0485 543 MobiDBLite consensus disorder prediction 418 432 - -
Vvi11g0485 543 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 1 534 - -
Vvi11g0485 543 Pfam RNA-binding, Nab2-type zinc finger 90 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0485 Vvi-Chr11 4296135 4303420 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vvi11g0485 zf-CCCH_3 2.9e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0485 - - vvi:100854466 1078.93