Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0481 ATGAGTTTTCCTGATTCCCGTGCTCTGGTTGCGCCACCATTGCATCCTTTTCCTGTTGGGGATGATGACATTGGTTCCTGGTCTCAGTTCCCAATGAACAATGAAGAATATGAGGTGCATTCACATTTTGAATACCCTCCTCACAAGAGGACTAGAAATTCTGAAGGCCAGATGCCAAATTCATCACCTCACCCATCCATGAATCCAAGGATACATCCACCAAATGCTCCAACCAGTAGAGGGACAAGCAATATTTTCTTCAAGACCCGGATATGTGCTAAATTTAAACTGGGTCAATGCCGGAATGGTGAGAACTGCAACTTTGCCCATGGTATGGAAGATATGCGCCAACCTCCACCCAACTGGCAAGAACTTGTTAATGTTGGTGGCCGTGAAGAAGAACGGGGGACAAAGATTTGGGATGAGGACCAGAGGATAATTCATAAGATGAAGCTGTGCAAGAAGTTCTATAATGGTGAAGAATGTCCATATGGGGACAGGTGCAATTTTCTTCATGAAGATCCAAAGAAGTTTAGGGATGATTCAGCGAGGCCTAGGGAGAGCTTTGCAATAAGCATTGGAACTACAGGGCCTCCAATGGAGCATGGAAGTGGTTCTAATCTTGGTTCTAACCTCAGTTCTAATCTCAGTTCTATGAATTCTGGTTTGGATCCTTTCAGAGGAAATGTGAAGCCTACATATTGGAAGACAAAGCTTTGCTGTAAGTGGGAAACCACTGGTCACTGCCCTTTCGGGGAGAAATGTCACTTTGCTCATGGGCAAGCTGAGCTACAGATGACTGGTGGTGGTGGTGGTGGTGGTGGCTGGGCTGAAGCTGAAGTGGGGAACACATGCTCCTTGCCTGCAAAGCTTCCCTCTGTTCCTGCTAATGTCTCAACTCCTCCTGAGTTGGGTACTGGGGCTCCTATCAATCCAGAAAGACAGAACAAGAAGCTATTACTGCAGTCAAAAGGATTCAAGAAGATCAATCGAATTTATGCTGATTGGATTGATGATCTGCCATCATTGAACAACAAAGTGAAGGACTGA 1050 0.4552 MSFPDSRALVAPPLHPFPVGDDDIGSWSQFPMNNEEYEVHSHFEYPPHKRTRNSEGQMPNSSPHPSMNPRIHPPNAPTSRGTSNIFFKTRICAKFKLGQCRNGENCNFAHGMEDMRQPPPNWQELVNVGGREEERGTKIWDEDQRIIHKMKLCKKFYNGEECPYGDRCNFLHEDPKKFRDDSARPRESFAISIGTTGPPMEHGSGSNLGSNLSSNLSSMNSGLDPFRGNVKPTYWKTKLCCKWETTGHCPFGEKCHFAHGQAELQMTGGGGGGGGWAEAEVGNTCSLPAKLPSVPANVSTPPELGTGAPINPERQNKKLLLQSKGFKKINRIYADWIDDLPSLNNKVKD* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0481 349 ProSiteProfiles Zinc finger C3H1-type profile. 86 113 IPR000571 GO:0046872
Vvi11g0481 349 MobiDBLite consensus disorder prediction 191 213 - -
Vvi11g0481 349 SUPERFAMILY CCCH zinc finger 85 117 IPR036855 GO:0046872
Vvi11g0481 349 Pfam CCCH-type zinc finger 151 172 IPR041367 -
Vvi11g0481 349 FunFam Zinc finger CCCH domain-containing protein 81 117 - -
Vvi11g0481 349 ProSiteProfiles Zinc finger C3H1-type profile. 147 175 IPR000571 GO:0046872
Vvi11g0481 349 MobiDBLite consensus disorder prediction 46 82 - -
Vvi11g0481 349 FunFam Zinc finger CCCH domain-containing protein 229 266 - -
Vvi11g0481 349 SMART c3hfinal6 147 174 IPR000571 GO:0046872
Vvi11g0481 349 SMART c3hfinal6 234 261 IPR000571 GO:0046872
Vvi11g0481 349 SMART c3hfinal6 86 112 IPR000571 GO:0046872
Vvi11g0481 349 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 87 112 IPR000571 GO:0046872
Vvi11g0481 349 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 235 261 IPR000571 GO:0046872
Vvi11g0481 349 ProSiteProfiles Zinc finger C3H1-type profile. 234 262 IPR000571 GO:0046872
Vvi11g0481 349 Gene3D - 229 266 - -
Vvi11g0481 349 Gene3D - 145 177 - -
Vvi11g0481 349 Gene3D - 79 117 - -
Vvi11g0481 349 FunFam Zinc finger CCCH domain-containing protein 39 144 176 - -
Vvi11g0481 349 PANTHER CCCH ZINC FINGER/TIS11-RELATED 213 283 IPR045877 GO:0003729
Vvi11g0481 349 MobiDBLite consensus disorder prediction 199 213 - -
Vvi11g0481 349 SUPERFAMILY CCCH zinc finger 147 174 IPR036855 GO:0046872
Vvi11g0481 349 SUPERFAMILY CCCH zinc finger 231 266 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0481 Vvi-Chr11 4252373 4255737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0481 236 265 C3H Transcription Factor Family AT1G68200 60.000 1.39e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vvi11g0481 zf-CCCH 4.9e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0481 - - vvi:100247398 713.375