Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0476 ATGAGGAGGCTGCTACTAGTTATCATAATTCCAGTTGTTTCAGTGATATTTCTCACTCTTGTCTCCTTTTGTTATTTACTATGGAGAAAGTACAACCCTGGAGGAACAATTTTGTCCCAAACCATCATAAAGAAGTGCATGAGGCTTCATCTAGCAGCTAATGACAGAGTTCAAAATGCAAATGGCCTTCAACTTGATATAAATGAGGATCATGAATTGCCACTGCTCAATTTTTCTTGGATATCAACTGCCACTAAAAACTTCTCCTTTGCAAATAGGCTTGGAGAGGGTGGTTTTGGACCTGTCTTTAAGGGTAATATAGGAGGGCATGAGTTTGCAGTGAAAAGACTTTCTAGTACTTCTGGACAAGGATTAGAGGAGTTCAAGAATGAGGTGCAACTAATTTCAAAGCTCCAGCACAGAAATCTTGTCAGGCTTTTGGGTTGTTGCATTCATCAAGAAGAAAAAATGTTGATTTATGAGTACATGCCCAACAAAAGCTTGGATTCCTTTCTATTTGATCCGATCCAGAAAAAACAACTAGATTGGGCAAAATGCTTTCACATCATTGAAGGAATTGCTCAAGGGCTTCTTTATCTTCACAAGTACTCTAGGTTAAGAATTATTCATCGGGATCTAAAAACCAGTAACATATTGTTGGATAGTTACATGAACCCCAAAATATCAGATTTTGGCTTGGCAAGAATATTTGGAGAGAATGAATCTAAAGCAAAAACAAAAAGAGTTGTCGGAACATATGGTTATATGTCTCCTGAATATGCGGTCCATGGACTTTTCTCTACAAAGTCTGGTGTATTCAGCTTTGGAGTTATTATGCTTGAGATTGTGAGTGGCAGGAGAAATGTAGCATTTTCTCAATCAGAGTGCACTTTGAACTTGCTAGGACATGCTTGGGATCTATGGAAAGATGGCCGAAGCATGGAGTTGATGGATCCAACATTGGCCATTTCATGTTCGATGAGTGAGCTCACACTATGTGTTCAGGTGGGTCTCTTATGCATCCAAGAAAGTGCAGAAGATAGGCCGACCATGTCAGATGTTGTTTCAATTCTTAGCAATGAAAGAGCAATTTTACCAACTCCAAGGCAGCCGGCCTTTTGTACTCTAATAAGTGTTCAAGGCACTGATTCACAAATGGAAGAGCCAAAATGCTCCTTGAATTATGTAACACTCTCAGTAGCAGAAGCTCGGTAA 1215 0.3942 MRRLLLVIIIPVVSVIFLTLVSFCYLLWRKYNPGGTILSQTIIKKCMRLHLAANDRVQNANGLQLDINEDHELPLLNFSWISTATKNFSFANRLGEGGFGPVFKGNIGGHEFAVKRLSSTSGQGLEEFKNEVQLISKLQHRNLVRLLGCCIHQEEKMLIYEYMPNKSLDSFLFDPIQKKQLDWAKCFHIIEGIAQGLLYLHKYSRLRIIHRDLKTSNILLDSYMNPKISDFGLARIFGENESKAKTKRVVGTYGYMSPEYAVHGLFSTKSGVFSFGVIMLEIVSGRRNVAFSQSECTLNLLGHAWDLWKDGRSMELMDPTLAISCSMSELTLCVQVGLLCIQESAEDRPTMSDVVSILSNERAILPTPRQPAFCTLISVQGTDSQMEEPKCSLNYVTLSVAEAR* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0476 404 CDD STKc_IRAK 94 358 - -
Vvi11g0476 404 SMART serkin_6 88 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0476 404 Pfam Domain of unknown function (DUF3403) 360 404 IPR021820 GO:0004674
Vvi11g0476 404 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 163 366 - -
Vvi11g0476 404 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 52 162 - -
Vvi11g0476 404 ProSiteProfiles Protein kinase domain profile. 88 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0476 404 SUPERFAMILY Protein kinase-like (PK-like) 68 358 IPR011009 -
Vvi11g0476 404 Gene3D Transferase(Phosphotransferase) domain 1 163 365 - -
Vvi11g0476 404 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 5 403 - -
Vvi11g0476 404 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Vvi11g0476 404 Pfam Protein tyrosine and serine/threonine kinase 90 358 IPR001245 GO:0004672|GO:0006468
Vvi11g0476 404 Gene3D Phosphorylase Kinase; domain 1 50 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0476 Vvi-Chr11 4209741 4211787 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0476 4 404 Receptor kinase-like Gene Family AT4G23220 47.044 5.20e-123 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi11g0476 PK_Tyr_Ser-Thr 1.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0476 - - vvi:109121513 784.252