Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0475 ATGAAAGAACCCTCTATGTTGCGCCGGAGGAGACCCAATTCGTCGAAGAAACTGAAACTCGTTTGCAGCTTCAATGGCCGATTCCAGACGCGTCCGCCCTCTGGTAAGCTTGGTTACGTCGGCGGCGATACTCGTATCATCTCCGTCGACCGAGGCATCGGATTCATGAAACTTCGGTCTAAGATCTCAGAGCTCTGCCCCGATATCCGTTCCTTCTCTCTCAAATACCGCCTTCCCGAGTCGGATCCTGTTCACGGTGACACCACCAATCTCGTTTTGATAGCTTCCGACGACGACGTTCGTTGCATGGTCGATGAGTACGATAAGATGGACTTCTACGGACAGCAAACAAGATTGAGGATTTTCGTTTTCCGTGATAATGGGTATGTTAACGTGAATCTCCCCATGAATTGTATTGAAAACATAAATGATTATGTGTGTGGGAAAAAGGGGTTTGGTGTTGAGGGGAAAGAGACTTGTGTGAAGGGTGTGAGTGATTTTGGTGATTATATTAGTAATGTGTTTCAAAGTCGAAATAGTGGGAGCTATTTGTTTGGACTCCAGTTTGATACTAAGGAAATCAACAATCCGGCGACTGTTGTGGCCGGAGGCCGGTATAGTGATCGTTCACTGAGAAAAGTGATCTTGAAACAACGGTTTTCGGCAAAGAAACCGGCTCCAATTAGCAGTTTTTGCAGTGGGGAAAGGGAATTTAGGCGTTCTGACGAGCAAAAATATTGTTACCCACTTATAGATTTAGCCCCTGAAGCATTAGTCCCAAAGAGTAAACAAACTGCTAATCTGAATTTTGAACACCCGCGTGAAGTGAATATTTTGATTTGCAAAACTGAGGATGCCCTTTCTCCAGGAAATCAAAATTTTGAAAATTTGGTAAGGAATGGAAATACAAGGGTGGATGGGAGTAGTCCCAGGCAGTGTTTGTTGAGGCTGTCTGGGTGTAATGGAGGTGGAATGAATCAAGGCATTTCAAATACATCCAGTGAGGTGGTTCAGTTTCCACAGCTGTCATGTATTTCAAGTATCATTTCGTTGTCAAGTGGTTCTAATGCTAAGCAGGACTTGAGAAACATGGACCCTATGTCATGGACTAATTTCAACAGGAAAAACATGCCATGTCCTGCAAATTATGATTCAGGGAAGATTAGTTTATTGCCGCTTTCTTGCAGCAATGAGATGGTGGGAAGTGCTTCTCCAATGAAAATCCTGTCTGCTAGAGATAGGGCGTTGGGGGGTGATCTTCAGAGTGGCATCCGCAAGCATAGGTTTGGCATGTGTGATACCAGAAATCATCGGATGTGTTTATATCACATACGTAACCATCAGAGTAATCTCTCTGAGATGGGTAGCAATCAAAATTTGAGGTTGGACGGAAGGTCTTGGTCAGGGCGATGCTGTCCTGGGCTCAGACCAAACCCAAACATAGCAAAACAGGGGCAATCTATGAGATCATACCATCCAAATTATTTGAAGCCATTGTCTTGCACACACACCCATACACTGCAAGGATTGATGAGAATGATGGACTCTAGCTTAAATAGTCACTCTTGCTCCCATGATCTCCAATATGCCAATGAGAACATAAGAGACCAGGGTATCCTTGCATCTGAATATGGAAGCCCAAATATTGAGGAATGTAAATTTGCCTACCATGGTGCATATGCTGGCATGGGCAACCCACCCCTCTTGTTTCGTAATGCTGTTGAGAACCCATTGAAGGACGGTTTCTTAACTGATTCTGGTAGTGGGATGCATGAAGTTCCACATCAGAACCCTTACCAGAATTGTCACAGAGTGCTCACAAATTGTGAATCTGGTTGTTATGATTCAAGGCAACCATTCTCATTGAGCCCTCAGAAAGTTGACAATATTTCTGCCTTTCTGAATTATCCAGGTTATAGCCAAGGAACAGAACTGAGATGCAACAGTAAGCTGTCAGATAGGGAAGCAGGTATTGAGTCATTAAGCACTCATCGTGATGGTGCCCATACTTTACAAGGTGGAGTTGCATCTCCAGTTGATCTTTCATTGGGTAATCTTTCATTGTCATCATCCAAAGAAGTGGAACCTCTTGCACTTTCTTCTCATGTTGACATTGATGTTTCTGAAGCCCTACTAAAGTCTCAATCAAAGCATTTGGATCTCATAGATGGACACTCAAGCCCAGAAGCTTACAACTCAAATGGAATGGAATCCGGTTCTCTCACTGGGAATGCAACCAAATTGGGAAATGATTATGTGCATAAAGAAGAAATCCAACTGGACCCTTCATCTGATTTAAGCATTGATGAAAAGAGGGATTTAAGCTTCTTATATTTTTTGCAGACTATAAAAAATACTGACCTGGAATACATAAAAGAACTTGGTTCGGGTACTTATGGAACTGTATCTTATGGAAAATGGAAGGGGTCTGATGTTGCCATTAAGAGGATAAAACCCAGTTGCTTCACAGAAGACACATTGGAGGAGGACCGATTGGTTGCAGAGTTCTGGAAGGAGGCCCACATACTAGGGCAGCTTCACCATCCAAATATTGTGGCATTCTATGGTGTAGTTACAGATGGACCTGTGACAAATTTGGCAACGGTAACAGAATACATGGTGAATGGCTCTCTTAAACAAGTGTTGCAAAAAAAAGATCGAACAATTGATCATCGGAAGAGATTAATTATCGCTATGGATGCAGCCTTTGGTATGGAATATCTACATGGGAAGAACATTGTTCATTTCGATTTAAAGTCTCATAACTTGTTCATGAATATGAGGGATCCTCAGCGACCAGTTTGCAAGATTGGTGATCTGGGCTTGTCAAAAATTAAGCAGAGGACCCTCATCTCTGGTGGGTTACGAGGAACTATACCATGGATGGCTCCAGAACTTTTTAACAGTAAGAATGACTTGGTAACAGAAAAGGTTGATGTATACTCATTTGGAATAGCCATGTGGGAACTCTTGACTGGGGAGGAACCTTATGGAAATAAGATTTGGGTTTTCTTTTTCAGCTGGTATAATCAAAGGCAATCTGCGACCCAAAATTCCAACCTGTGA 3066 0.4279 MKEPSMLRRRRPNSSKKLKLVCSFNGRFQTRPPSGKLGYVGGDTRIISVDRGIGFMKLRSKISELCPDIRSFSLKYRLPESDPVHGDTTNLVLIASDDDVRCMVDEYDKMDFYGQQTRLRIFVFRDNGYVNVNLPMNCIENINDYVCGKKGFGVEGKETCVKGVSDFGDYISNVFQSRNSGSYLFGLQFDTKEINNPATVVAGGRYSDRSLRKVILKQRFSAKKPAPISSFCSGEREFRRSDEQKYCYPLIDLAPEALVPKSKQTANLNFEHPREVNILICKTEDALSPGNQNFENLVRNGNTRVDGSSPRQCLLRLSGCNGGGMNQGISNTSSEVVQFPQLSCISSIISLSSGSNAKQDLRNMDPMSWTNFNRKNMPCPANYDSGKISLLPLSCSNEMVGSASPMKILSARDRALGGDLQSGIRKHRFGMCDTRNHRMCLYHIRNHQSNLSEMGSNQNLRLDGRSWSGRCCPGLRPNPNIAKQGQSMRSYHPNYLKPLSCTHTHTLQGLMRMMDSSLNSHSCSHDLQYANENIRDQGILASEYGSPNIEECKFAYHGAYAGMGNPPLLFRNAVENPLKDGFLTDSGSGMHEVPHQNPYQNCHRVLTNCESGCYDSRQPFSLSPQKVDNISAFLNYPGYSQGTELRCNSKLSDREAGIESLSTHRDGAHTLQGGVASPVDLSLGNLSLSSSKEVEPLALSSHVDIDVSEALLKSQSKHLDLIDGHSSPEAYNSNGMESGSLTGNATKLGNDYVHKEEIQLDPSSDLSIDEKRDLSFLYFLQTIKNTDLEYIKELGSGTYGTVSYGKWKGSDVAIKRIKPSCFTEDTLEEDRLVAEFWKEAHILGQLHHPNIVAFYGVVTDGPVTNLATVTEYMVNGSLKQVLQKKDRTIDHRKRLIIAMDAAFGMEYLHGKNIVHFDLKSHNLFMNMRDPQRPVCKIGDLGLSKIKQRTLISGGLRGTIPWMAPELFNSKNDLVTEKVDVYSFGIAMWELLTGEEPYGNKIWVFFFSWYNQRQSATQNSNL* 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0475 1021 SUPERFAMILY CAD & PB1 domains 35 130 - -
Vvi11g0475 1021 ProSitePatterns Protein kinases ATP-binding region signature. 794 815 IPR017441 GO:0005524
Vvi11g0475 1021 SMART serkin_6 788 1021 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0475 1021 Pfam Protein tyrosine and serine/threonine kinase 788 1001 IPR001245 GO:0004672|GO:0006468
Vvi11g0475 1021 SMART PB1_new 32 126 IPR000270 GO:0005515
Vvi11g0475 1021 ProSitePatterns Serine/Threonine protein kinases active-site signature. 913 925 IPR008271 GO:0004672|GO:0006468
Vvi11g0475 1021 SUPERFAMILY Protein kinase-like (PK-like) 773 1000 IPR011009 -
Vvi11g0475 1021 CDD PB1_UP2 21 124 - -
Vvi11g0475 1021 Gene3D Phosphorylase Kinase; domain 1 782 873 - -
Vvi11g0475 1021 PANTHER SERINE-THREONINE PROTEIN KINASE 541 1000 - -
Vvi11g0475 1021 Pfam PB1 domain 35 125 IPR000270 GO:0005515
Vvi11g0475 1021 CDD STKc_MAP3K-like 794 999 - -
Vvi11g0475 1021 Gene3D Transferase(Phosphotransferase) domain 1 874 1019 - -
Vvi11g0475 1021 ProSiteProfiles Protein kinase domain profile. 788 1021 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0475 Vvi-Chr11 4194812 4202353 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0475 780 999 MAP Kinase Kinase Kinase AT5G57610 74.091 1.20e-108 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Vvi11g0475 PK_Tyr_Ser-Thr 2.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0475 - - vvi:100267909 1994.16