Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0471 ATGGAAGACAAGAAAGCAAGCATAATTGCCGTCTCATCGGTCGTTGCCCTCATCATCTTGATCATAGTTGCTCGCGTCTCTCTGAAACTTTCCAATACTTTCTTCCTCATTCTTGGTGCTGACATTGCTGCCATACTTGCTATCTTCACATATGTTATAATCAGATGGCGTTTTAATCGTCGAAGGAAATTGTTAGAGACACGACTCGTTTCAGAGGGCCGAGAGCTTCGAATCGAGTATAGTTTCCTTAGAAAAGTTGCAGGGGTTCCAACAAAGTTTAGATACAAGGAGCTTGAGGAAGCAACAGACAACTTCCAGGCATTGATAGGCCGCGGAGCATCTGCTTCTGTTTTCAGAGGAATCCTGAATGATGGCACTTCTGTTGCTGTGAAAAGAATTGAAGGAGAGGAGCATGGGGAGAAGGAATTCAAATCTGAAGTTGCAGCAATTGCCAGCGTGCAACATGTAAATCTTGTCCGCCTTCTCGGATATTGTTGTGTTCCTGGAGGGCCTCGTTTTCTTATTTATGATTTCATCCAAAATGGATCATTGGATTGCTGGATTTTCCCTCAGAGGGAAAGTCAAGGCCGGCCCAGGGGCTGCTTGTCATGGGACTTTAGATATAGAGTTGCCCTCGATGTTGCGAAGGCCCTTTCTTATCTTCATCATGATTGCAGGTCCCGGGTCTTACACCTTGATGTCAAGCCAGAAAACATACTTCTTGATGAGAATTATAGAGCACTTGTATCAGATTTTGGACTGTCAAAGTTAATGAGGAAAGATGAAAGCCGAGTTCTTACGACAATCAGAGGGACTAGAGGTTACTTGGCTCCAGAGTGGCTATTGGAGCATGGAGTTTCTGAGAAATCTGATATCTACAGTTATGGGATGGTACTCTTTGAGATGCTTGGAGGCCAGAGGAATGTTTGCTTGATCGAAAACGGCAACGACAGGTCTCAAAGGAAATGGCAATATTTTCCAAAAGTGGTGACTGAGAAAATGAGAGAAGGGAAGCTTATGGAGGTTGTTGACCATAGGTTAGTAGAAGGAGGAGGTATCGATGAGAGGGAGGTTAAGAGATTGGTTTATGTAGCTTTATGGTGCATACAAGAGAAGGCCAGGCTTAGACCAACCATGGCCCGTGTGGTTGAGATGCTTGAAGGCCATGTGACAGTGGACGAGCCCCCTGAGACTCAAATGATCATTGTTGACCTATTATGCACTGATGAAGAACCAGCTAATGCCTGTAACAGGCCAAGGATGGCTGCATTGGTAACACCCCAAGTAGACAATGCTACTCTTCCTTCCACTTCCACCTACTCATATGCCTTGTCCGTTCTATCAGGCCGGTAA 1353 0.4508 MEDKKASIIAVSSVVALIILIIVARVSLKLSNTFFLILGADIAAILAIFTYVIIRWRFNRRRKLLETRLVSEGRELRIEYSFLRKVAGVPTKFRYKELEEATDNFQALIGRGASASVFRGILNDGTSVAVKRIEGEEHGEKEFKSEVAAIASVQHVNLVRLLGYCCVPGGPRFLIYDFIQNGSLDCWIFPQRESQGRPRGCLSWDFRYRVALDVAKALSYLHHDCRSRVLHLDVKPENILLDENYRALVSDFGLSKLMRKDESRVLTTIRGTRGYLAPEWLLEHGVSEKSDIYSYGMVLFEMLGGQRNVCLIENGNDRSQRKWQYFPKVVTEKMREGKLMEVVDHRLVEGGGIDEREVKRLVYVALWCIQEKARLRPTMARVVEMLEGHVTVDEPPETQMIIVDLLCTDEEPANACNRPRMAALVTPQVDNATLPSTSTYSYALSVLSGR* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0471 450 SMART serkin_6 103 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0471 450 Pfam Protein kinase domain 107 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0471 450 SUPERFAMILY Protein kinase-like (PK-like) 85 387 IPR011009 -
Vvi11g0471 450 ProSiteProfiles Protein kinase domain profile. 103 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0471 450 ProSitePatterns Protein kinases ATP-binding region signature. 109 131 IPR017441 GO:0005524
Vvi11g0471 450 FunFam Putative receptor-like protein kinase 70 178 - -
Vvi11g0471 450 PANTHER OS07G0415500 PROTEIN 50 398 - -
Vvi11g0471 450 Gene3D Phosphorylase Kinase; domain 1 71 178 - -
Vvi11g0471 450 Gene3D Transferase(Phosphotransferase) domain 1 179 401 - -
Vvi11g0471 450 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672|GO:0006468
Vvi11g0471 450 FunFam Putative receptor-like protein kinase 179 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0471 Vvi-Chr11 4152758 4154110 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0471 1 398 Receptor kinase-like Gene Family AT5G20050 66.085 0.0 526
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi11g0471 Pkinase 6.9e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0471 - - vvi:104880655 862.833