Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0460 ATGAAGAGCATAGGCGAGCTCAAAAATCTTGTTGGGCTCAGCCCAGGACTTTCAAGCTTTTGGGTCGAAGACGACCTCGTTTCGAGTCTTTCTTTTATCTCACCCGACGCCTGTGAAAAGTTGAGAGATTTTCCTTACGGTTTCTGTTCAAATTTCAGGGTTTTGATATTTGACTCGTCTAGGGTTTGGAATGTTATACTTTTCTTTTGGAAGCAGGCTTCGTCAATGAAAGGAGAAGTACAGCTAGAACCATCAGGTGAGCGAAACCCTAGGGACTCTGATCCTCTGCTTGAGAACCAGGCGGATTCATCCACAGGAAGTTCAAGCGAGATAAATAGTGAGGACATTGAAGCTGGCTCTGTACCCTGTTGTCGCATTTGTCTCGAGTGCGATGGAGAACCAGATGATGAATTGATATCTCCATGCATGTGCAAAGGCACCCAACAGTTTGTTCATCGTTCATGCCTTGATCATTGGCGTTCAGTGAAGGAAGGATTTGCTTTCTCACATTGCACAACTTGCAAGGCGCAGTACCATCTTCAAGTTGCATTATTCGAAGACAACTCTTGGCGTAAGATAAAGTTCAGACTTTTTGTGGCCAGAGATGTTTTCCTTGTATTTTTGGCTGTACAAACTGTCATCGGTGCTATGGGTGGATTTGCATACATCATGGACAAAGATGGGGCTTTCAGGAATTCGTTCAGTGATGGTTGGGATCGAATATTGTCCAGGCATCCTATACCATTCTACTACTGTATAGGGGTACTGGCCTTCTTTGTTTTGCTGGGGTTTTTTGGTCTCATATTGCATTGCTCCTCCTTAAATAGCAATGATCCTCATATGGCGGGCTGCCAGAACTGCTGCTATGGATGGGGCATCTTGGATTGTTTTCCAGCATCTATGGAAGCATGCTTCGCACTTGTCATAGTTTTTGTTGTCATCTTTGCCATTCTGGGAGTTGCCTATGGTTTCCTTGCTGCCACCATGGCCATTCAAAGAATTTGGCAGAGGCATTACCACATACTAACCAAAAGGGAGCTCACGAAGGAGTACATTGTGGAGGATCTCCGGGGCTGTTATACGCCACCAAAACTGGATCCAGAACATGAAGAACGTCTGAAAATGCTTAAACTTTTGTAG 1140 0.4474 MKSIGELKNLVGLSPGLSSFWVEDDLVSSLSFISPDACEKLRDFPYGFCSNFRVLIFDSSRVWNVILFFWKQASSMKGEVQLEPSGERNPRDSDPLLENQADSSTGSSSEINSEDIEAGSVPCCRICLECDGEPDDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQYHLQVALFEDNSWRKIKFRLFVARDVFLVFLAVQTVIGAMGGFAYIMDKDGAFRNSFSDGWDRILSRHPIPFYYCIGVLAFFVLLGFFGLILHCSSLNSNDPHMAGCQNCCYGWGILDCFPASMEACFALVIVFVVIFAILGVAYGFLAATMAIQRIWQRHYHILTKRELTKEYIVEDLRGCYTPPKLDPEHEERLKMLKLL* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0460 379 Pfam RING-variant domain 124 174 IPR011016 GO:0008270
Vvi11g0460 379 SUPERFAMILY RING/U-box 121 179 - -
Vvi11g0460 379 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 80 379 - -
Vvi11g0460 379 MobiDBLite consensus disorder prediction 96 114 - -
Vvi11g0460 379 MobiDBLite consensus disorder prediction 80 114 - -
Vvi11g0460 379 SMART ringv_2 123 175 IPR011016 GO:0008270
Vvi11g0460 379 CDD RING_CH-C4HC3_MARCH 124 175 - -
Vvi11g0460 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 188 IPR013083 -
Vvi11g0460 379 ProSiteProfiles Zinc finger RING-CH-type profile. 116 181 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0460 Vvi-Chr11 4024220 4033487 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0460 76 379 C3H Transcription Factor Family AT1G11020 77.500 5.12e-166 465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0460 - - vvi:100254401 626.706