Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0458 ATGGAGAAGAAAAGGGTGGCTGTTCCTCTCGTGTGCCACGGCCATTCCCGACCGGTTGTGGATTTGTTTTACAGTCCCATCACCCCAGATGGGTTCTTTCTTATCAGCGCCAGCAAGGATTCTAGCCCCATGCTTAGAAATGGAGAGACTGGAGATTGGATTGGAACATTTGAAGGACACAAGGGTGCAGTATGGAGTTGCTGCTTGGATACGAATGCTTTACGTGCTGCATCTGGCTCAGCGGACTTCACTGCGAAAATATGGGATGCTTTAACAGGGGATGAATTGCACTCATTTGAACACAAGCACATTGTTCGAGCTTGTGCTTTTTCAGAGGATACACACTCTCTGCTTACTGGAGGAGTTGAGAAAATTCTTCGTATATTTGACTTGAATCGCCCAGATGCACCTCCTAGAGAAGTGGATAATTCTCCTGGTTCAGTCAGAACTGTTGCATGGCTCCATAGTGATCAAACAATATTAAGTTCGTGTACAGATATTGGGGGTGTAAGATTATGGGACGTAAGAAGTGGTAAAATAGTCCAGACACTTGAGACTAACTCTTCTGTAACCAGTGCTGAAGTGAGTCAAGATGGCCGTTATATCATAACTGCTGATGGGTCCAGTGTTAAATTTTGGGATGCTAATCATTTTGGGTTGGTGAAAAGCTACAAGATGCCTTGTACTGTAGAATCAGCATCATTGGAACCAAAAAATGGGGATAAGTTCATTGCTGGGGGAGAAGATATGTGGATTCGCTTATTTGATTTTCATACTGGGGAAGAGATCGCATGCAACAAAGGTCACCATGGTCCTGTTCATTGTGTACGTTTCTCACCTGGAGGAGAATCATATGCCTCTGGATCTGAGGATGGAACCATTAGAATTTGGCAGACAGGCCCTCTGACACATGATAACAATGAGATGTTCAGGGCAAATGGATTGACTGGAAAAGTGAAGGTGGCTGCAGAAGAGGTTTCATGCAAGATCGAGGGTTTTCACATTGCAGATGAAGGGAAAGCTGGAGAGGAGGCAGGGACTGCATGA 1047 0.4499 MEKKRVAVPLVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASGSADFTAKIWDALTGDELHSFEHKHIVRACAFSEDTHSLLTGGVEKILRIFDLNRPDAPPREVDNSPGSVRTVAWLHSDQTILSSCTDIGGVRLWDVRSGKIVQTLETNSSVTSAEVSQDGRYIITADGSSVKFWDANHFGLVKSYKMPCTVESASLEPKNGDKFIAGGEDMWIRLFDFHTGEEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGPLTHDNNEMFRANGLTGKVKVAAEEVSCKIEGFHIADEGKAGEEAGTA* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0458 348 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 266 298 - -
Vvi11g0458 348 ProSiteProfiles Trp-Asp (WD) repeats profile. 57 98 IPR001680 GO:0005515
Vvi11g0458 348 SUPERFAMILY WD40 repeat-like 6 298 IPR036322 GO:0005515
Vvi11g0458 348 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 57 89 - -
Vvi11g0458 348 FunFam Serine-threonine kinase receptor-associated protein 8 319 - -
Vvi11g0458 348 SMART WD40_4 177 214 IPR001680 GO:0005515
Vvi11g0458 348 SMART WD40_4 50 89 IPR001680 GO:0005515
Vvi11g0458 348 SMART WD40_4 92 130 IPR001680 GO:0005515
Vvi11g0458 348 SMART WD40_4 217 256 IPR001680 GO:0005515
Vvi11g0458 348 SMART WD40_4 134 174 IPR001680 GO:0005515
Vvi11g0458 348 SMART WD40_4 5 47 IPR001680 GO:0005515
Vvi11g0458 348 SMART WD40_4 259 298 IPR001680 GO:0005515
Vvi11g0458 348 CDD WD40 14 298 - -
Vvi11g0458 348 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 7 340 - -
Vvi11g0458 348 Gene3D - 9 314 IPR015943 GO:0005515
Vvi11g0458 348 ProSiteProfiles Trp-Asp (WD) repeats profile. 266 298 IPR001680 GO:0005515
Vvi11g0458 348 Pfam WD domain, G-beta repeat 54 89 IPR001680 GO:0005515
Vvi11g0458 348 Pfam WD domain, G-beta repeat 265 297 IPR001680 GO:0005515
Vvi11g0458 348 Pfam WD domain, G-beta repeat 179 214 IPR001680 GO:0005515
Vvi11g0458 348 Pfam WD domain, G-beta repeat 94 130 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0458 Vvi-Chr11 3993200 4002802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0458 9 296 Eukaryotic Initiation Factors Gene Family AT2G46290 28.221 9.24e-39 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0458 K13137 - vvi:100261048 724.161