Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0450 ATGGGGCCTTACGACTCTGCCATCTCTACCGGCAGCACCACCAGCTCCCCCTCTTCTGCCGCCAAACCGTCTGACATCGATGGACTTCTCGCCGGCGCCGGCTACAAGGTCCGCTCTACGGAGCTCCATCAAGTCGCCCAGCGTCTGGAGCGACTGGAGACGGTGATGGTCAACGCTCCGTCGGAGATCTCACAGCTGGCCTCCGATGTTCTTCACTGCAACCCCTCCGATATCGCCTCCTGGGTGGACTCGATGCTCTTCGAGTTCAATCCGCCCGTGTCAATACCTTCTGATCTATCGGATTTTTCTGATCTCACTTATATTGACAGCGTGGTGAGCCCCGCCATAAATCAGACGGTTTGCAACAATTCGTGGGTGGAACATCATACACCTCAGCAGCAGCAGCAAGAACTCACTCATCAGTTGACGGTGGTTACAGCGATGGAAGAAGATTCCGGTATCAGATTGGTGCACATGATGATGACGTGTGCTGAGTCAGTCCAACGTGGCGATCTACCCTTGGCTGGATCGCTAATTGAAGAGATGCAGGCTTTGCTGACTCGTGTAAACACTGGCTGCGGCATCGGGAAAGTCGCTCGCTACTTCATTGACGCACTCAACCGCCGTGTATTCACACCGCAGGCCCCCTGCGCCACTGGCTGGTCTAACGAGAACGAGATTTTATATCATCACTTCTACGAGGCTTGTCCGTACCTGAAATTCGCTCACTTCACGGCTAATCAAGCCATCTTAGAAGCTTTCGACGGCCACGATTGCGTCCACGTCGTTGACTTCAACCTAATGCACGGCTTACAATGGCCGGCTCTTATTCAAGCCCTAGCCCTGCGTCCCGGTGGGCCTCCTTTACTCCGTTTGACAGGCATTGGTCCCCCATCGCCTGACGGCCGCGACTCGCTCCGAGAAATCGGTCTCCGGCTCGCTGAGTTAGCCCGGTCCGTCAACGTCCGCTTCGCTTTTCGTGGTGTGGCAGCTTCGCGGCTGGAAGATGTGAAGCCGTGGATGCTACAGGTGAGCCCAAAGGAAGCCGTAGCTATAAACTCAATCATGCAGCTTCACCGGCTTCTCGGATCCGGTCCGACCCGGGTGTCTGCCATAGAAACGGTGCTTGGGTGGATCCGAAGCTTGAACCCGAAAATCGTGACAGTGGTTGAACAGGAAGCGAATCATAACCAATCAGAGTTCTTGGATCGGTTCACCGAGGCCCTGTACTACTACTCCACAATGTTCGATTCCCTAGAGGCTTGCTCTCTCCAGCCGGAGAAAGCCGTAGCCGAGATTTACATCCAGAAAGAGATATGCAACGTGTTGTGTTGCGAAGGGTCGGCTCGAGTGGAAAGGCACGAGCCGTTGGCTAAGTGGAGGAATCGGCTTGGAGCAGCAGGGTTCAGGCCGTTGAACCTGGGATCCAATGCGTTCAAACAAGCCAGTATGCTGCTGACGCTGTTCTCGGCTGAGGGGTACTGTGTTGAGGAGCATGACGGGTGTTTGACGCTAGGCTGGCACAGCCGCCCTCTCATAGCGGCTTCGGCTTGGCAACCCCTCCTAGACACAGTTATAAATCATAATAATCTCCTCTAA 1599 0.5491 MGPYDSAISTGSTTSSPSSAAKPSDIDGLLAGAGYKVRSTELHQVAQRLERLETVMVNAPSEISQLASDVLHCNPSDIASWVDSMLFEFNPPVSIPSDLSDFSDLTYIDSVVSPAINQTVCNNSWVEHHTPQQQQQELTHQLTVVTAMEEDSGIRLVHMMMTCAESVQRGDLPLAGSLIEEMQALLTRVNTGCGIGKVARYFIDALNRRVFTPQAPCATGWSNENEILYHHFYEACPYLKFAHFTANQAILEAFDGHDCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNVRFAFRGVAASRLEDVKPWMLQVSPKEAVAINSIMQLHRLLGSGPTRVSAIETVLGWIRSLNPKIVTVVEQEANHNQSEFLDRFTEALYYYSTMFDSLEACSLQPEKAVAEIYIQKEICNVLCCEGSARVERHEPLAKWRNRLGAAGFRPLNLGSNAFKQASMLLTLFSAEGYCVEEHDGCLTLGWHSRPLIAASAWQPLLDTVINHNNLL* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0450 532 SMART DELLA_2 27 99 - -
Vvi11g0450 532 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 131 515 IPR005202 -
Vvi11g0450 532 ProSiteProfiles GRAS family profile. 147 519 IPR005202 -
Vvi11g0450 532 Pfam Transcriptional regulator DELLA protein N terminal 27 92 IPR021914 -
Vvi11g0450 532 MobiDBLite consensus disorder prediction 1 22 - -
Vvi11g0450 532 MobiDBLite consensus disorder prediction 1 23 - -
Vvi11g0450 532 Gene3D - 25 89 IPR038088 -
Vvi11g0450 532 Pfam GRAS domain family 156 519 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0450 Vvi-Chr11 3959545 3961143 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0450 26 519 GRAS Transcription Factor Family AT1G14920 49.614 1.91e-168 486
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vvi11g0450 GRAS 4.5e-127 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0450 K14494 - vvi:100249084 1031.17