Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0449 ATGCCCAGCACTGAAGAAAGCTTGGAAAATGCAAAAAGGAGTATAGGGAGGAGAAAGGGAAGGAGAAGGGGGAAAGGAGCCAAAGTGGAGCAGTTGCAGGATCCAAAGCTTGATTTAAGTGTTGGTTCTCATGACTCAAGCAAAGGTCTGGTGTTCCACCGCAGGCCCGGTTATGGTCAATTGGGAAGGAAATGTGTAGTTAAAGCCAACCATTTCCTAGCGCAAGTGCCAGATACAGACTTGAGTCAATATAGTGTTACCATAACCCCCGAAGTTGCTTCTCGCAAAATCAACAAATCTATCATGGCCCAGTTGGTGAAACTTCACAGAGATACTGACCTAGGGATGAGGCTCCCTGTTTATGATGGTAAACGGGTCCTTTACACTGCTGGACTGCTTCCATTTGTATCAAAAGAGTTCACTGTGAAACTGGTTGAAGAGGATGAGGGGACAGGGATTACAAAGGAGCGAGAGTTCAAAGTGACAATCAAGTTTGTAGGTATCACTAGTATGGTCCAATTGCGAGAGTTTCTTGCTGGGAAACAAGTTGATACTCCCCATGAAATAATTAGGATCTTTGATATTGTGTTAAATCAACTAGCAGCCCAAAGGTATGTATCAGTTGGGAGATGCTTATATTCTCCTGATATTAAAAATCCTCAGCAACTAGGTGGGGGTTTACAATCATGGCAAGGCTTCTATAAGAGTATAAGGCCAACTCAGATGGGGTTATCATTGAACATCGATATGTCATCAACTGCATTCATTGAACCATTACCTGTTATTGACTTTGTGGCTCAACTTTTGGACAAAGATGTATTTTCAAGGCCATTGTCAGATGCAGACCGTGTCAAGGTTAAGAAAGCTCTTAGAGGTGTTAAAGTTGAAGTTACGCACAGAGGAAATGTACGAAGGAAATATCGGATTTCAGGACTGACATCACAACCTACAAGGGAACTAATTTTCCCAGTTGATGAGCAAATGAACATGAAATCAGTTGTTGAGTACTTTCAGGAGATGTATGGATTTACCATTCGATATTCTCATCTACCTTGCCTCCAAGTAGGTAACCAGAGGAAAGTGAATTACTTACCAATGGAGGCTTGTAAGATTATTGGGGGACAGAGATATACCAAAGGGCTGACTGACAAGCAGATAACTTCCTTGTTAAAAGTAACATGCCAAAGACCCAGGGATCGAGAAACAGACATTTTACAGACCATTAACCAAAATGGGTATGAGAAAGATCCCTATGCGAAGGAGTTTGGCATCACTGTAGATGAAAAGCTTGCTTCAGTTGAAGCTCGAGTTCTACCTGCACCATGGCTTAAATATCACGATACCGGAAAAGAAAAAGAATATTTGCCGCAAGTTGGTCAATGGAATATGACAAACAAGAAAATGATAAATGGAAGCACTATCAATTACTGGGCTTGCATCAACTTCTCACGAAGTGTTCAGGAGAGTACTGTAAGCGGTTTTTGTCATCAGCTGGTTCAAATGTGCAAAGTTTCTGGCATGGAATTCAACCATGAGCCAGTAATTCCAATACATTCAGCTAGACCGGATCAGGTTAAGAAGGCCTTGAAACATGTATATAGTGCTGCTGCAAACAAACTTGGAGGAAAAGAGTTGGAGTTACTCATTGCCATTCTTCCAGACAACAATGGCTCTTTGTATGGTGATTTGAAGCGGATTTGTGACACAGATCTGGGGTTGATTTCTCAGTGCTGTCTTACTAAAAATGTCTACAAGATTAGCAACCAGTACCTGGCAAACGTGTCACTTAAAATCAATGTTAAGATGGGTGGAAGAAATACTGTGCTTTTAGATGCTTTGAGTTCAGGAATTCCTTTGGTTAGTGACATTCCAACAATCATATTTGGAGCCGATGTAACTCATCCAGAGACTGGAGATGACTCTTGTCCATCAATTGCTGCTGTAGTAGCCTCCCAAGACTGGCCAGAAGTCACCAAGTATGCTGGATTGGTATGTGCTCAGGCTCATCGGCAAGAACTTATTCAAGATTTGTATAAAACCTGGAAAGATCCTCAAGGGGGCACAGTTACTGGAGGCATGATCAGAGAGCTTTTACTTTCATTTAAGGCAGCCACTGGAAAAAAACCATTGAGGATAATATTTTACAGGGATGGTGTCAGTGAAGGGCAGTTCTACCAGGTTCTACTATATGAACTTGATGCCATTCGTAAGGCCTGCGCATCATTGGAACCTAGTTACCAACCTCCAGTGACATTTGTTGTCGTCCAAAAACGGCACCACACTAGACTCTTTGCAAGCAACCACAATGACAAAAGCAGCACTGATAGGAGTGGGAACATCTTACCTGGTACTGTGGTCGATTCGAAGATCTGCCATCCCAGTGAGTTTGACTTTTATCTATGCAGTCATGCAGGAATCCAGGGGACCAGCCGACCCGCTCATTATCATGTTCTCTGGGATGAGAACAACTTTACAGCAGATGAGATCCAATCTTTGACGAACAACCTCTGTTACACGTATGCAAGGTGCACTCGGTCTGTTTCTCTAGTTCCTCCTGCGTATTATGCTCATCTGGCAGCCTACAGAGCTCGATTCTACATGGAACCTGATAAGCCTGAGAATGCAATACCAAATTGCATGCGCACATCAAATGAATCACGCGTCCGGCCCCTGCCAGCATTGAATGAGAAGGTGAAGAATGTGATGTTCTACTGTTAG 2718 0.4286 MPSTEESLENAKRSIGRRKGRRRGKGAKVEQLQDPKLDLSVGSHDSSKGLVFHRRPGYGQLGRKCVVKANHFLAQVPDTDLSQYSVTITPEVASRKINKSIMAQLVKLHRDTDLGMRLPVYDGKRVLYTAGLLPFVSKEFTVKLVEEDEGTGITKEREFKVTIKFVGITSMVQLREFLAGKQVDTPHEIIRIFDIVLNQLAAQRYVSVGRCLYSPDIKNPQQLGGGLQSWQGFYKSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVAQLLDKDVFSRPLSDADRVKVKKALRGVKVEVTHRGNVRRKYRISGLTSQPTRELIFPVDEQMNMKSVVEYFQEMYGFTIRYSHLPCLQVGNQRKVNYLPMEACKIIGGQRYTKGLTDKQITSLLKVTCQRPRDRETDILQTINQNGYEKDPYAKEFGITVDEKLASVEARVLPAPWLKYHDTGKEKEYLPQVGQWNMTNKKMINGSTINYWACINFSRSVQESTVSGFCHQLVQMCKVSGMEFNHEPVIPIHSARPDQVKKALKHVYSAAANKLGGKELELLIAILPDNNGSLYGDLKRICDTDLGLISQCCLTKNVYKISNQYLANVSLKINVKMGGRNTVLLDALSSGIPLVSDIPTIIFGADVTHPETGDDSCPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWKDPQGGTVTGGMIRELLLSFKAATGKKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPSYQPPVTFVVVQKRHHTRLFASNHNDKSSTDRSGNILPGTVVDSKICHPSEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEIQSLTNNLCYTYARCTRSVSLVPPAYYAHLAAYRARFYMEPDKPENAIPNCMRTSNESRVRPLPALNEKVKNVMFYC* 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0449 905 Gene3D paz domain 252 377 - -
Vvi11g0449 905 Pfam Argonaute linker 2 domain 399 445 IPR032472 -
Vvi11g0449 905 Pfam PAZ domain 284 389 IPR003100 GO:0005515
Vvi11g0449 905 FunFam Protein argonaute-2 252 378 - -
Vvi11g0449 905 SMART DUF1785_2 206 258 IPR014811 -
Vvi11g0449 905 SMART PAZ_2_a_3 268 404 IPR003100 GO:0005515
Vvi11g0449 905 SMART Piwi_a_2 547 868 IPR003165 GO:0003676
Vvi11g0449 905 FunFam protein argonaute 10-like 616 905 - -
Vvi11g0449 905 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 52 869 - -
Vvi11g0449 905 FunFam Argonaute 10 437 610 - -
Vvi11g0449 905 Pfam N-terminal domain of argonaute 63 197 IPR032474 -
Vvi11g0449 905 Pfam Mid domain of argonaute 456 533 IPR032473 -
Vvi11g0449 905 Gene3D - 616 905 IPR036397 GO:0003676
Vvi11g0449 905 Gene3D - 437 610 - -
Vvi11g0449 905 ProSiteProfiles PAZ domain profile. 259 373 IPR003100 GO:0005515
Vvi11g0449 905 CDD PAZ_argonaute_like 258 372 - -
Vvi11g0449 905 SUPERFAMILY PAZ domain 253 413 IPR036085 GO:0005515
Vvi11g0449 905 Pfam Argonaute linker 1 domain 207 257 IPR014811 -
Vvi11g0449 905 CDD Piwi_ago-like 417 867 IPR045246 -
Vvi11g0449 905 Pfam Piwi domain 548 867 IPR003165 GO:0003676
Vvi11g0449 905 SUPERFAMILY Ribonuclease H-like 536 869 IPR012337 -
Vvi11g0449 905 ProSiteProfiles Piwi domain profile. 547 868 IPR003165 GO:0003676
Vvi11g0449 905 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0449 Vvi-Chr11 3942400 3949066 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0449 52 905 Eukaryotic Initiation Factors Gene Family AT5G43810 76.074 0.0 1407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0449 K11593 - vvi:100268067 1796.17