Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0448 ATGACGATCGACGACGACAACTCCATATACGTGGGCGGACTCCCTTACAATGCCACCGAGGACAGCATCCGCAAGGTCTTCAATTTGTACGGTGCCATCGTCGCTGTTAAGATTATTAATGAGCGGGGCGTTGGGGGAAAATGCTATGGCTTTGTTACCTTTACAAATCCTCGATCAGCAATTGATGCCATTAATGACATGAATGGCAGGGATATTGATGGCCGAATTGTTGTAGTAAATGAAGTAAGGACCAGAGGTGGGAGATCAAATTTTGGTCGTGAAAGTTTTCGACGTAATTCTGAAAGGGGCATGGATTGGGATAGGGGCAGGGATAGAGAAAGGGATTATGGTCATGATAAGGACCATTTTCGGGATCGAAACATTGATCGATCTAGAGATCATGATCGAGAGAGAGAAAGAGGACATGAGCGTGCACGTGATCATGATCGAACAAGGGATCGTTTCATGGATAGAAATCGAGATCAAGACAGAGATATGGAGGACAATGAGCAAGAACATAGCAGAAACCATGACCAGGATTGGGAAAGAGACCATGATATAGACTGGGATCGAGATAGGGAGATGAACAACACCAATGATCACGATAAAAGTGGAGACAAAGATGAACACTCAAAGAAACGAAATGGTGGTTGGCATAGCAGAGGACTTTCATCAGATTCAGATGGTGATTATCATGACCAGGTGGAAGAGGTGGATAGATCAATTCAGAGGCGTGAAGAACTCCAAAAAGAGATATCTCAGATGGAAGAGAGGTTGGAAGAGAAGCAACAACTTGTTTTGGACTTACAGAAAAAATCCTTGAAACTGGAGGGCGCATTGACTGCTGCAAAGAAGCTATCTTCACAACGTCAGTTGCAGTTGACCAAGCTGCATAGATGTTTTCTGCAAGTAAAAGAGAACACTGAAAGACTTAAAAGCTGTGAACAGGAACTCCAGACTGTTCTTGGTGCAGCAATGATGGAAATCGACATTGTTGATGATGTTGGCTTAAGAGATGGTATCCTAGAAAAAGGCAGAACATGA 1044 0.4358 MTIDDDNSIYVGGLPYNATEDSIRKVFNLYGAIVAVKIINERGVGGKCYGFVTFTNPRSAIDAINDMNGRDIDGRIVVVNEVRTRGGRSNFGRESFRRNSERGMDWDRGRDRERDYGHDKDHFRDRNIDRSRDHDRERERGHERARDHDRTRDRFMDRNRDQDRDMEDNEQEHSRNHDQDWERDHDIDWDRDREMNNTNDHDKSGDKDEHSKKRNGGWHSRGLSSDSDGDYHDQVEEVDRSIQRREELQKEISQMEERLEEKQQLVLDLQKKSLKLEGALTAAKKLSSQRQLQLTKLHRCFLQVKENTERLKSCEQELQTVLGAAMMEIDIVDDVGLRDGILEKGRT* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0448 347 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 75 IPR000504 GO:0003723
Vvi11g0448 347 MobiDBLite consensus disorder prediction 102 232 - -
Vvi11g0448 347 MobiDBLite consensus disorder prediction 102 216 - -
Vvi11g0448 347 SUPERFAMILY RNA-binding domain, RBD 4 112 IPR035979 GO:0003676
Vvi11g0448 347 SMART rrm1_1 8 80 IPR000504 GO:0003723
Vvi11g0448 347 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 84 IPR000504 GO:0003723
Vvi11g0448 347 CDD RRM_SF 9 80 - -
Vvi11g0448 347 Coils Coil 231 272 - -
Vvi11g0448 347 PANTHER GEO13361P1-RELATED 8 179 - -
Vvi11g0448 347 Gene3D - 2 99 IPR012677 -
Vvi11g0448 347 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 2 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0448 Vvi-Chr11 3917245 3928043 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0448 2 79 Eukaryotic Initiation Factors Gene Family AT1G71770 28.205 3.92e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0448 - - vvi:100245744 686.411