Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0447 ATGATGGCATCCCCTTCCGAACTAAGCCTTGACTGCAAACCCCACAGCTATTCTTTGCTGCTAAAATCCTTTGGAGACCAGCCTGACCAGACCCAAAAGCTTGAAGACTTCCTTGCTCGTCTCGAAGAAGAACGCCTCAAGATCGAGGTCTTCAAGCGCGAGCTACCTCTCTGCATGCAACTTCTCACGGATGCTGTGGAGGCTTCAAGGCAGCAGCTGCAGTCCTACAGAGCAAATCAAGGGGCAAGACCATTTCTTGAAGAATTCATACCCCTCAAGCATTCAACCCCGAAAGGCTCGGAAAAAACATCAAACATGTCCGACAAGGCCAATTGGATGACATCTGCTCAACTATGGAGCCCAGCAGGCGATGAAACCAAGCAGCAATCCACGCTAACATCTTCCAAGGAACCCGATATTGGCTTCACGGTTAGTCCAAAGCTGGGCTTCGATAACAAACAGAGAAATGGAGGAGCCTTCCTTCCATTCTCAAAAGAACGGAACTCGTGCCCAAGTCCAAATCTACGGGTTCTTCCGGACTTGGCTCTTGCTAATTCTGCTGATCATAAGGACGTAGAAGATAAGAAATGTTCTGAGACGGAAAACGGAATAGCCTTCTCAAGGAGGGAGAATTGCGGTAAGGTTGTGAATGGAGGTGCGACAATGGAGCAAGTAAAGGCAGCAATTACTCCATCAGAAGCACAGACCACAGCTGCAGCTCCCACCGCCAATACTCAAACTCACAGGAAAGCTAGGAGGTGTTGGTCGCCGGACTTGCACCGGCGATTTGTAAATGCCCTTCAGATGCTTGGTGGTTCTCAAGTGGCCACCCCAAAGCAAATCAGAGAGCTGATGAAAGTTGACGGTTTGACCAATGATGAAGTTAAAAGCCATTTGCAGAAGTACAGACTCCACACTAGACGACCTAGCCCAAGCCCACAAGCCACCGGAGCCGCTGCCCCTCAGCTGGTGGTCGTAGGACTAGGAGGCATATGGGTCCCACCAGAGTACGCCACCGCAGCTCACACCGGCGGCACCACCCTCTACGGTGCCCACCCGCCGTCCCACACTTCCCCACACTATTGCGGTCCCCCAGTGCCCCAAGACTTCTACGCAGCACCCGCCCAGCCCCACCACCACAGCCTCCACCACCAGCTCCACATGTACAAGGCCTCTCCCCAGACACAGAGCTCTCCGGACTCCGACATGAGGGGGGCAGGCGACCGTTCGGAGAGCATTGAAGATGGGAAGTCGGAGAGCAGTAGCTGGAAGGGTGAGAGTGGTGAGAATGGAGGAGAGAGAAAAGGGTTGGTTACGTTGAGAGATGATGGAGAAGAGAGTAATAGAGCGATGGAAGTAAGATTACTTTCAACTTCTAACTTCTAA 1386 0.5231 MMASPSELSLDCKPHSYSLLLKSFGDQPDQTQKLEDFLARLEEERLKIEVFKRELPLCMQLLTDAVEASRQQLQSYRANQGARPFLEEFIPLKHSTPKGSEKTSNMSDKANWMTSAQLWSPAGDETKQQSTLTSSKEPDIGFTVSPKLGFDNKQRNGGAFLPFSKERNSCPSPNLRVLPDLALANSADHKDVEDKKCSETENGIAFSRRENCGKVVNGGATMEQVKAAITPSEAQTTAAAPTANTQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSPQATGAAAPQLVVVGLGGIWVPPEYATAAHTGGTTLYGAHPPSHTSPHYCGPPVPQDFYAAPAQPHHHSLHHQLHMYKASPQTQSSPDSDMRGAGDRSESIEDGKSESSSWKGESGENGGERKGLVTLRDDGEESNRAMEVRLLSTSNF* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0447 461 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 21 424 IPR044787 GO:0003700|GO:0006355
Vvi11g0447 461 FunFam Myb family transcription factor 249 307 - -
Vvi11g0447 461 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 247 307 IPR017930 -
Vvi11g0447 461 MobiDBLite consensus disorder prediction 404 450 - -
Vvi11g0447 461 MobiDBLite consensus disorder prediction 231 251 - -
Vvi11g0447 461 MobiDBLite consensus disorder prediction 390 461 - -
Vvi11g0447 461 NCBIfam myb-like DNA-binding domain, SHAQKYF class 250 305 IPR006447 GO:0003677
Vvi11g0447 461 Coils Coil 59 79 - -
Vvi11g0447 461 Gene3D - 249 307 - -
Vvi11g0447 461 Pfam Myb-like DNA-binding domain 252 303 IPR001005 -
Vvi11g0447 461 MobiDBLite consensus disorder prediction 231 250 - -
Vvi11g0447 461 Coils Coil 34 54 - -
Vvi11g0447 461 SUPERFAMILY Homeodomain-like 247 308 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0447 Vvi-Chr11 3913887 3915970 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0447 2 446 G2-like Transcription Factor Family AT2G03500 51.709 2.26e-124 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vvi11g0447 Myb_DNA-binding 1e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0447 - - vvi:100250892 907.516