Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0444 ATGGCAGTGGGTTCTGACGCTGGGTTTGTTTTTCTTACTGTGTTGTTGGCTTGGGTGGTGTTACTGAGTGGACGAGTGAGTAGCGAGCCGACTCAGGACAAGCAAACCCTCCTTGCTTTTCTCTCTCAGATTCCTCATGAGAATCGCATCCAATGGAACGCTTCAGACTCCGCCTGCAATTGGGTCGGGGTGGGGTGTGATGCTAATCGCTCTAATGTCTACACTCTTCGTCTTCCAGGCGTGGGGCTTGTGGGTCAGATCCCAGAGAATACTATCGGCCGTTTAAGTCAACTTCGGGTGCTCAGTCTTAGGTCGAATCGTCTCTCCGGTGATATCCCCCGAGATTTTGCAAACTTGACGTTGTTGCGCAGCCTTTACCTTCAGGATAATCTTTTTTCCGGCGGATTTCCGGGGAGTATTACTCAGTTAACTCGGTTGGGTCGGTTGGATCTTTCGTCCAACAACTTCACCGGAGAGCTTCCATTTTCCATCAACAATTTGAACCAATTGACTGGACTGTTCTTGCAGAACAATGGCTTTTCTGGCAGTATACCCAGCATAAACTCTGATGGATTGGATGATTTCAATGTTTCCAACAACAGGCTCAATGGTTCAATCCCCCAGACATTATTCAAGTTCGGGTCTTCTTCATTCGCCGGAAACCTAGCTCTCTGCGGCGGACCGTTGCCGCCATGCAACCCATTTTTCCCCTCTCCAACACCATCTCCCTCAATTGTTCCATCTAACCCAGTTCAGAAAAAGTCGAAAAAGCTCTCGACAGCAGCTATAATCGCAATCTCAGTTGGGTCCGCTCTAATTCTCTGTCTCCTCTTACTCTTCCTCCTCCTCTGCCTGCGCAGGCGCCAGCGCCGGCAGCCCCCGAAGCCACCAAAGCCCGAAACAACCCGATCCATAGTGGCTGAGACCGCCACCTCCTCTTCCAAGGACGACATCACCGGCGGGTCAGCTGAAGCAGACAGAAACAAGTTGGTTTTCTTCGAGGGCGGCGTCTACAGCTTTGATTTGGAAGATTTGCTGAGGGCTTCAGCAGAGGTGTTGGGCAAAGGAAGCGTAGGGACTTCGTACAAGGCAGTGTTGGAGGAAGGTACTACGGTGGTTGTGAAGAGATTGAAAGATGTTACAGTCACTAAGAAGGAGTTCGAAATGCAAATTGACGTTCTAGGGAAGATTAAGCACGAAAATGTGGTTCCTCTCAGAGCTTTTTACTTCTCCAAGGATGAGAAATTGCTAGTCTACGACTTCATGGCTGCCGGCAGTTTGTCTGCCCTTCTGCACGGCAGTAGAGGATCGGGCCGTACGCCACTTGACTGGGACAACCGGATGAGAATAGCGCTCAGCGCCGCAAGGGGGATAGCCCACCTACACGTGTCGGGAAAGGTGGTCCATGGCAACATCAAGTCCTCCAACATCCTGCTCCGCCCGGACCACGATGCTTGCGTTTCCGATTTCGGGCTCAACCCGCTCTTTGGAAACTCCACGCCGCCCAATCGGGTCGCGGGATATCGGGCGCCCGAGGTGATGGAAACCCGAAAGGTCACGTTCAAGTCGGACGTATACAGTTTCGGCGTGTTGCTGTTGGAGCTATTGACGGGGAAGGCACCAAATCAAGCGTCGTTGGGGGAGGAGGGGATTGATCTTCCAAGGTGGGTCCAGTCGGTGGTCCGTGAGGAATGGACTGCTGAGGTATTCGACGTGGAGTTGATGCGATACCACAACATCGAGGAGGAGATGGTGCAGCTGCTGCAAATCGCGATGGCCTGCGTCTCCACCGTACCAGATCAGAGACCCGCCATGCAGGAGGTGGTCCGAATGATTGAGGATATGAACAGGGGCGAGACGGACGACGGCTTACGACAATCGTCCGATGACCCATCCAAGGGATCGGGCGGTCACACGCCTCCGCCGGAGTCACGGACCCCACCTGCGGCGGTCACACCTTAG 1962 0.5326 MAVGSDAGFVFLTVLLAWVVLLSGRVSSEPTQDKQTLLAFLSQIPHENRIQWNASDSACNWVGVGCDANRSNVYTLRLPGVGLVGQIPENTIGRLSQLRVLSLRSNRLSGDIPRDFANLTLLRSLYLQDNLFSGGFPGSITQLTRLGRLDLSSNNFTGELPFSINNLNQLTGLFLQNNGFSGSIPSINSDGLDDFNVSNNRLNGSIPQTLFKFGSSSFAGNLALCGGPLPPCNPFFPSPTPSPSIVPSNPVQKKSKKLSTAAIIAISVGSALILCLLLLFLLLCLRRRQRRQPPKPPKPETTRSIVAETATSSSKDDITGGSAEADRNKLVFFEGGVYSFDLEDLLRASAEVLGKGSVGTSYKAVLEEGTTVVVKRLKDVTVTKKEFEMQIDVLGKIKHENVVPLRAFYFSKDEKLLVYDFMAAGSLSALLHGSRGSGRTPLDWDNRMRIALSAARGIAHLHVSGKVVHGNIKSSNILLRPDHDACVSDFGLNPLFGNSTPPNRVAGYRAPEVMETRKVTFKSDVYSFGVLLLELLTGKAPNQASLGEEGIDLPRWVQSVVREEWTAEVFDVELMRYHNIEEEMVQLLQIAMACVSTVPDQRPAMQEVVRMIEDMNRGETDDGLRQSSDDPSKGSGGHTPPPESRTPPAAVTP* 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0444 653 ProSiteProfiles Protein kinase domain profile. 347 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0444 653 Pfam Leucine rich repeat N-terminal domain 31 67 IPR013210 -
Vvi11g0444 653 Pfam Protein kinase domain 350 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0444 653 Gene3D Ribonuclease Inhibitor 30 189 IPR032675 -
Vvi11g0444 653 FunFam Probable inactive receptor kinase RLK902 30 188 - -
Vvi11g0444 653 Gene3D Transferase(Phosphotransferase) domain 1 422 632 - -
Vvi11g0444 653 SUPERFAMILY L domain-like 35 215 - -
Vvi11g0444 653 MobiDBLite consensus disorder prediction 291 321 - -
Vvi11g0444 653 FunFam pollen receptor-like kinase 1 316 421 - -
Vvi11g0444 653 Pfam Leucine rich repeat 72 131 IPR001611 GO:0005515
Vvi11g0444 653 Gene3D Ribonuclease Inhibitor 191 232 IPR032675 -
Vvi11g0444 653 Gene3D Phosphorylase Kinase; domain 1 314 421 - -
Vvi11g0444 653 PANTHER OS05G0588300 PROTEIN 11 625 - -
Vvi11g0444 653 MobiDBLite consensus disorder prediction 614 628 - -
Vvi11g0444 653 CDD STKc_IRAK 353 615 - -
Vvi11g0444 653 MobiDBLite consensus disorder prediction 614 653 - -
Vvi11g0444 653 MobiDBLite consensus disorder prediction 304 319 - -
Vvi11g0444 653 SUPERFAMILY Protein kinase-like (PK-like) 351 612 IPR011009 -
Vvi11g0444 653 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 422 626 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0444 Vvi-Chr11 3880844 3883366 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0444 33 633 Receptor kinase-like Gene Family AT5G58300 55.392 0.0 645
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vvi11g0444 Pkinase 5.7e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0444 - - vvi:100266327 1180.62