Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0442 ATGTCCCAAACCAACTGGGAAGCCGATAAAATGTTGGATGTGTACATACATGATTATTTTCTGAAGAGGAAATTACATGCTTCTGCAAAGGCCTTTCAAGCGGAAGCTAAAGTATCCACTGAACCTGTCGCCATCGATGCACCTGGTGGCTTTCTCTTTGAATGGTGGTCTGTTTTTTGGGATATATTTATAGCTAGGACAAATGAGAAACACTCGGAGGCTGCTGCATCTTACATTGAGACTCAATTAATCAAGGCACGGGAACTGCAGCAGCAGCAGCAGCAGCAACAACAACAACAACAGCAGCAGCAGCAGCATCAGAAACCTCAGCAACAGCAGCAGCAGCAGCAGCAGCAGATGCAAATGCAGCAGCTTTTATTGCAGAGGCATGTTCAGCAACAACAACAGCAGCAGCAACAGCGGAGAGATGGGACCCAGATTCTAAATGGCTCTGGCAATGGGCTTGTTAGCAATGATGCTCTTATGAGGCAGAACCCTGCAACTGCAAATACCTTGGCAACAAAGATGTATGAGGAAAGATTAAAGCTTCCACTTCAGAGGGATCCCTTGGACGATGCAGCTATGAAGCAGAGGTTTGGTGACAATATGGGCCAGCTTCTTGAACCAAACCATGCCTCACTGTTGAAATCAGCTGCAGTCAGTGGCCAACCAGGGCAGACACTGCATGGTGCACCTGGAGGCATTTCTGGGAATCTTCAGCAAGTTCAAAGTCGGAATCAACAACTTCAAGTTTCCTCGGACATAAAGAGTGAGATGAATCCAATGATGAATCCCAGGGCTGCTGGTCCAGAAGGATCATTGATTGGAGTTCATGGATCAAATCAAGGTGGTAACAATCTAACTCTGAAAGGATGGCCACTAACCGGACTGGACCAGCTTCGATCTGGGATTCTTCAGCAGCACAAGTCTTTGATACAGCCTTCTCAGCCCTTTCATCAACTTCAATTACAGCAACAACTTCTTCTTCAAGCACAGCAAAACTTGGCATCCCCATCTGCCAGTGATTTGGAATGCAGAAAATTGAGAATGCTTCTTAATAGTCGGAATTCACTTGGGAAGGATGGCCAATTAAATACTGTTGGTGATGTAGTTGCAAATGTTGGATCACCAATGCAAGTCGGTTGCCCTGTTTTGCCTCGTGGAGACACAGATATGCTGATCAAGTTACAGCAGCAACAACTGCAAAACAGCAATCAACAGCAGCAACAATATCTGCAGCATCCACTTTCTAGTCAGCAGTCTCAGAGTTCAAATCATCACCTCCTCCATCAGCAAGATAAAATGATTGGTTCTGGAAGCATTGGGTTGGATGGTAGCATGTCAAATACGTTCCGAGGAAATGATCAGACTTCAAAAGGTCAAATTGGGCGAAAGAGAAAGCAGCCAGTGTCATCTTCAGGTCCTGCCAATAGCTCAGGAACTGGAAACACAGCTGGACCATCCCCAAGTTCAGCACCATCAACACCTTCAACTCACACACCAGGAGATGTAATCTCAATGCCGACTTTGTCGCATAATGGTGGTTCCTCTAAGTCTTTACTTATGTATGGATCTGATGGTATGGGCACACATACCTCAGCACCAAATCAACTGGCTGATGTGGATCGATTTGTTGATGATGGATCTCTTGATGATAATGTTGAGTCATTTTTAGCTCATGATGATGGAGACCCTAGAGATACGGTTGGTCGAAGTGTGGATGGCAGCAAAGGTTTTTCATTTTCGGAAGTCCGGTGTATTACTGCAAGTACAAGTAAAGTTGAATGTTGTCACTTCTCTTCAGATGGAAAACTGCTTGCCACTGGTGGGCAGGATAAAAAGGCTGTATTATGGTGCACAGAGTCTTTTACGGCTAAGTCTAGACTTGAAGAACATTCTCAAATGATTACGGATATCCGTTTCAGTCCAAGCATGCCGCGACTTGCAACATCTTCAGCTGACAAAACTGTCAGGGTTTGGGATGTTGATAACCCAGTCTACTCACTACGTACTTTTACTGGACATTCCACCAATGTTACATCGCTAGACTTCCACCCTAATAAAGATGACCTTATCTGCTCTTGTGATGGTAATGGTGAGATACGATATTGGAGTATCCCCAATGGTAGTTGTACTAGGGTCTTCAAGGGTGGAACGAACCATATGAGGTTTCAACCACGCCATGGAAGGTATCTGGCTGCTGCTGCAGAGGGTGTGGTTTCCATACTTGATGTGGAAACCCAGGCCTGCAGACAAAAATTACAGGGCCATAAAAACCATGTTTCTGTGTGTTGGGATTCTTCTGGCAGCTATCTGGCAACTGTCAGTGAGGACTTGGTTAAAGTTTGGACAGTTGGTTCTGGGGGCAAAGCAGCGGAATGCATTCATGAGTTGCACTATAGTGGCAACAAATTCAATTCCTGTGCTTTCCATCCCACTTATACCTCTTTGTTGGTCATTGGCTGTTACCAGTCTCTGGAGCTTTGGAACATGACAGAGAACAAGACAATGACACTACCAGCGCACGACAAACTAATTTCTTCATTAGCAGTATCAAACGTCACTGGTTTAGTAGCTTCAGCTAGTCATGACAACTGTGTCAAGTTGTGGAAGTGA 2616 0.4511 MSQTNWEADKMLDVYIHDYFLKRKLHASAKAFQAEAKVSTEPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEAAASYIETQLIKARELQQQQQQQQQQQQQQQQHQKPQQQQQQQQQQMQMQQLLLQRHVQQQQQQQQQRRDGTQILNGSGNGLVSNDALMRQNPATANTLATKMYEERLKLPLQRDPLDDAAMKQRFGDNMGQLLEPNHASLLKSAAVSGQPGQTLHGAPGGISGNLQQVQSRNQQLQVSSDIKSEMNPMMNPRAAGPEGSLIGVHGSNQGGNNLTLKGWPLTGLDQLRSGILQQHKSLIQPSQPFHQLQLQQQLLLQAQQNLASPSASDLECRKLRMLLNSRNSLGKDGQLNTVGDVVANVGSPMQVGCPVLPRGDTDMLIKLQQQQLQNSNQQQQQYLQHPLSSQQSQSSNHHLLHQQDKMIGSGSIGLDGSMSNTFRGNDQTSKGQIGRKRKQPVSSSGPANSSGTGNTAGPSPSSAPSTPSTHTPGDVISMPTLSHNGGSSKSLLMYGSDGMGTHTSAPNQLADVDRFVDDGSLDDNVESFLAHDDGDPRDTVGRSVDGSKGFSFSEVRCITASTSKVECCHFSSDGKLLATGGQDKKAVLWCTESFTAKSRLEEHSQMITDIRFSPSMPRLATSSADKTVRVWDVDNPVYSLRTFTGHSTNVTSLDFHPNKDDLICSCDGNGEIRYWSIPNGSCTRVFKGGTNHMRFQPRHGRYLAAAAEGVVSILDVETQACRQKLQGHKNHVSVCWDSSGSYLATVSEDLVKVWTVGSGGKAAECIHELHYSGNKFNSCAFHPTYTSLLVIGCYQSLELWNMTENKTMTLPAHDKLISSLAVSNVTGLVASASHDNCVKLWK* 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0442 871 ProSitePatterns Trp-Asp (WD) repeats signature. 648 662 IPR019775 -
Vvi11g0442 871 CDD WD40 583 871 - -
Vvi11g0442 871 ProSiteProfiles Trp-Asp (WD) repeats profile. 587 618 IPR001680 GO:0005515
Vvi11g0442 871 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 629 664 - -
Vvi11g0442 871 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 839 871 - -
Vvi11g0442 871 ProSiteProfiles Trp-Asp (WD) repeats profile. 629 664 IPR001680 GO:0005515
Vvi11g0442 871 MobiDBLite consensus disorder prediction 134 161 - -
Vvi11g0442 871 MobiDBLite consensus disorder prediction 399 535 - -
Vvi11g0442 871 Coils Coil 79 106 - -
Vvi11g0442 871 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 672 710 - -
Vvi11g0442 871 SUPERFAMILY WD40 repeat-like 580 871 IPR036322 GO:0005515
Vvi11g0442 871 SMART WD40_4 622 661 IPR001680 GO:0005515
Vvi11g0442 871 SMART WD40_4 791 830 IPR001680 GO:0005515
Vvi11g0442 871 SMART WD40_4 747 784 IPR001680 GO:0005515
Vvi11g0442 871 SMART WD40_4 832 871 IPR001680 GO:0005515
Vvi11g0442 871 SMART WD40_4 665 705 IPR001680 GO:0005515
Vvi11g0442 871 SMART WD40_4 708 744 IPR001680 GO:0005515
Vvi11g0442 871 SMART WD40_4 580 619 IPR001680 GO:0005515
Vvi11g0442 871 MobiDBLite consensus disorder prediction 399 431 - -
Vvi11g0442 871 ProSiteProfiles Trp-Asp (WD) repeats profile. 839 871 IPR001680 GO:0005515
Vvi11g0442 871 Pfam LisH 10 36 IPR006594 GO:0005515
Vvi11g0442 871 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 871 - -
Vvi11g0442 871 Gene3D - 721 871 IPR015943 GO:0005515
Vvi11g0442 871 Gene3D - 559 720 IPR015943 GO:0005515
Vvi11g0442 871 SMART Lish 8 40 IPR006594 GO:0005515
Vvi11g0442 871 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Vvi11g0442 871 ProSiteProfiles Trp-Asp (WD) repeats profile. 672 714 IPR001680 GO:0005515
Vvi11g0442 871 MobiDBLite consensus disorder prediction 442 520 - -
Vvi11g0442 871 Pfam WD domain, G-beta repeat 834 871 IPR001680 GO:0005515
Vvi11g0442 871 Pfam WD domain, G-beta repeat 629 661 IPR001680 GO:0005515
Vvi11g0442 871 Pfam WD domain, G-beta repeat 585 618 IPR001680 GO:0005515
Vvi11g0442 871 Pfam WD domain, G-beta repeat 669 704 IPR001680 GO:0005515
Vvi11g0442 871 Pfam WD domain, G-beta repeat 750 783 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0442 Vvi-Chr11 3840189 3852851 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0442 587 870 Miscellaneous Gene Families AT5G08390 27.483 2.54e-19 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Vvi11g0442 WD40 0.018 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0442 - - vvi:100259308 1546.56