Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0436 ATGGCGAGCAAGCATGATCGGAGTCAAGAGGGAAAAAGTACGTGCGCTCTATATATAGAGGGAACTGGGAAGAAGTCCACACGCTCACACTACCGCACAAGAAGGATGCAAGACTTCAAGTTTGACACGATGCCGTCCAACACCGCGGACCAATCGCCGGACTCTGGCACCACCGGCATGAGTTTGAAGGATACTGAGTTGACCTTGGGCTTGCCTGGAGAGGCTCAGGTGGTCATCGTCGGAGGGAAGAGCTGCTCCAAACGTGGATACTCCGACACCGTTGATTTCAGGTTCCGTTGCTGCAGCGGCGAGTCGAGCGCAAAGGCTGAGAAGGTTGATTGGCCGGGAAAGGAGATCTCCGGCCCCGGGAAAGCTCCGGACTCAAAGGCACAAGTGGTAGGGTGGCCACCAGTGAGATCGGTAAGGAAGAAGGCGTTGAAGAGTTGCAAGTACGTGAAGGTGGCGGTGGATGGAGCACCGTACCTGCGGAAAGTGGATTTGGAGGTGCACCGTAGCTACCAGCAGCTGTTGATGGCCTTGGAGACGATGTTCGATTGCTTCACCATCAGTAGCAACGATTTGGAAGAAAGCAAGATCATGAATCCTGTAAATGGAGCAGAATACGTGCCAACATACGAAGACAAAGACGGGGACTGGATGTTAGTTGGAGACGTTCCTTGGAATATGTTTGTGGAATCATGCAAGCGGGTACGGTTGATGAAAAGCTCAGAGGCTATTGGGTTAGCACCAAGGACCCCTTCCTGCACAAGCACGACTTGA 780 0.5308 MASKHDRSQEGKSTCALYIEGTGKKSTRSHYRTRRMQDFKFDTMPSNTADQSPDSGTTGMSLKDTELTLGLPGEAQVVIVGGKSCSKRGYSDTVDFRFRCCSGESSAKAEKVDWPGKEISGPGKAPDSKAQVVGWPPVRSVRKKALKSCKYVKVAVDGAPYLRKVDLEVHRSYQQLLMALETMFDCFTISSNDLEESKIMNPVNGAEYVPTYEDKDGDWMLVGDVPWNMFVESCKRVRLMKSSEAIGLAPRTPSCTSTT* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0436 259 Pfam AUX/IAA family 146 251 IPR033389 -
Vvi11g0436 259 Gene3D - 143 254 - -
Vvi11g0436 259 SUPERFAMILY CAD & PB1 domains 142 241 - -
Vvi11g0436 259 ProSiteProfiles PB1 domain profile. 149 242 IPR000270 GO:0005515
Vvi11g0436 259 FunFam Auxin-responsive protein 144 252 - -
Vvi11g0436 259 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 61 247 IPR003311 GO:0005634|GO:0006355
Vvi11g0436 259 MobiDBLite consensus disorder prediction 112 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0436 Vvi-Chr11 3794574 3797664 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0436 136 245 B3 DNA Binding Superfamily AT3G61830 32.727 9.44e-09 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Vvi11g0436 AUX_IAA 4.4e-52 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0436 K14484 - vvi:100247336 532.332